SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207253

Length: 210 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene207253
TCATTTCTAAAGACTTTTGGTTGTGAAGCCTTTGTCCACATTAATAAAGAAAATAGAACAAAGCTTGAGGCAAAATCAAAGAAATGTACCTTTATTGGATATGGTGTTAATGATTTTGATTATCGCTTTTACGATTATGAAAAACACAAAATCATTAAGAGCAAAGATGTCATATTCAATCAAAGGTTTTGTATAAGGATCAGATGTAGA

Ace file of the UniGene sp_v3.0_unigene207253 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Polyprotein-like	-	-	7.797e-06	-

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 70 - 407

Fln protein: SFLKTFGCEAFVHINKENRTKLEAKSKKCTFIGYGVNDFDYRFYDYEKHKIIKSKDVIFNQRFCIRIRCR

Protein Length: 71

Fln nts: TCATTTCTAAAGACTTTTGGTTGTGAAGCCTTTGTCCACATTAATAAAGAAAATAGAACAAAGCTTGAGGCAAAATCAAAGAAATGTACCTTTATTGGATATGGTGTTAATGATTTTGATTATCGCTTTTACGATTATGAAAAACACAAAATCATTAAGAGCAAAGATGTCATATTCAATCAAAGGTTTTGTATAAGGATCAGATGTAGA

Fln Alignment:

AllPine_b_rep_c70184___SFLKTFGCEAFVHINKENRTKLEAKSKKCTFIGYGVNDFDYRFYDYEKHKIIKSKDVIFNQRFCI
B8LKX7________________SHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDER-CI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
4	66		33		0.997471
18	33			66	0.997454
31		50	50		1.0
54		50		50	1.0
65	50		50		1.0
80	50		50		1.0
93		50		50	1.0
94	50	50			1.0
122	33		66		0.997467
123	33		66		0.997458
156		75		25	0.996486
186		33		66	0.997464
191	66			33	0.997476
193	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain