SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206907

Length: 267 nt

UniGene Fasta

>sp_v3.0_unigene206907
AGTGTTGCATACAACGGAGCGAAGTAGAAGGAGCGGCAGGGCGAGGAAGGAGCGAAGTCATACCATGCCTTAAATCTTTACAATTACAGAATTTGCGAGGTCGAATTTGGTGATTTTTTGGTCGAAGATGCCTCACTCTACAGTCTGGAATTCTCATCCCAAGAAATATGGGCCCGGTTCCCGCACCTGTCGGGTGTGTGGCAATCCACATGGCTTGATTAAATATGGTCTCAATTGTTGCCGACAGTGCTTTCGCTCTTATTCCAA

Ace file of the UniGene sp_v3.0_unigene206907

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal S29 subunit [Arabidopsis thaliana] dbj\|BAD43582.1\| ribosomal S29 subunit [Arabidopsis thaliana] dbj\|BAD43833.1\| ribosomal S29 subunit [Arabidopsis thaliana]	-	-	9.0e-18	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	40S ribosomal protein S29	-	-	1.74e-23	-

Source	Gene names
Sma3	At3g43980; At3g44010; At4g33865; CHLREDRAFT_195607; GSVIVT00016417001; LOC_Os03g56234; LOC_Os11g41610; LOC_Os12g32380; OSJNBb0094O03.12; Os11g0634500; Os12g0508300; OsI_13694; OsI_36775; OsI_38468; OsI_38471; OsJ_12757; OsJ_34533; PHYPADRAFT_126236; PHYPA

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Ribosomal protein S14	IPR001209	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33865.1	Ribosomal protein S14p/S29e family protein chr4:16233395-16234114 REVERSE LENGTH=56	2.0e-25	88%
RefSeq	Arabidopsis thaliana	NP_567938.1	40S ribosomal protein S29 [Arabidopsis thaliana]	2.0e-25	88%
RefSeq	Populus trichocarpa	XP_002313170.1	predicted protein, partial [Populus trichocarpa]	3.0e-25	86%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NJU6

Fln msg: STOP codon was not found. Distance to subject end: 8 aas,

Fln protein: MPHSTVWNSHPKKYGPGSRTCRVCGNPHGLIKYGLNCCRQCFRSYS

Protein Length: 47

Fln nts: AGTGTTGCATACAACGGAGCGAAGTAGAAGGAGCGGCAGGGCGAGGAAGGAGCGAAGTCATACCATGCCTTAAATCTTTACAATTACAGAATTTGCGAGGTCGAATTTGGTGATTTTTTGGTCGAAG_-_ATGCCTCACTCTACAGTCTGGAATTCTCATCCCAAGAAATATGGGCCCGGTTCCCGCACCTGTCGGGTGTGTGGCAATCCACATGGCTTGATTAAATATGGTCTCAATTGTTGCCGACAGTGCTTTCGCTCTTATTCCAA

Fln Alignment:

AllPine_b_rep_c68507___MPHSTVWNSHPKKYGPGSRTCRVCGNPHGLI-KYGLNCCRQCFRSYS
A9NJU6________________MPHSAVWNSHPKKYGPGSRACRVCGNPHGLIRKYGLNCCRQCFRTYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain