SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206762

Length: 347 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene206762
CCTTCAAGACGGCCGTGTGGTTCTGGATGCAGAACTGTCATTCTGCCATAACCTCCGGGCAGGGCTTCGCTGCCACAATTAAAGCCATCAACAGCATGGAATGCAACGGTGGAAACACTCCTGCAGTGAACAGCAGAGTTAATTACTACAATACAATATGTAGCCAGTTGGGTGTGGATCCCGGAGCCAACGTCTCCTGCTAAATCTTTTCTCTCTTCATGGCTGCCAAATATATCAATAAAATGCCAAAGATGTCCATGGCTATCCACTAAATAAAATTTGCACTGCACCTCTCGTGCCGTGTGGATATAGATTCTTTCACACATTTAGTTGAAGTGAACGGTTAC

Ace file of the UniGene sp_v3.0_unigene206762 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class IV chitinase Chia4-Pa1.3 n=8 Tax=Picea RepID=Q6WSS1_PICAB	-	-	2.0e-26	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Class IV chitinase	-	-	4.939e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	2.071e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		2.071e-17	%

Source	Gene names
Sma3	At2g43590; Bcchi; CHB4; CHI4; Ch4; Ch4A; Chi4; Chi4C; Chi4D; Cht; Cht4; EP3; GSVIVT00034623001; GSVIVT00034628001; GSVIVT00034629001; GSVIVT00034634001; GSVIVT00034636001; GSVIVT00034638001; GSVIVT00034642001; GSVIVT00034646001; GSVIVT00034647001; H0522A0

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43590.1	Chitinase family protein chr2:18081592-18082749 REVERSE LENGTH=264	7.0e-23	59%
RefSeq	Arabidopsis thaliana	NP_181887.1	chitinase-like protein [Arabidopsis thaliana]	9.0e-23	59%
RefSeq	Populus trichocarpa	XP_002339637.1	predicted protein, partial [Populus trichocarpa]	2.0e-21	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQM1

Fln msg: your sequence is shorter than subject: 67 - 285

Fln protein: FKTAVWFWMQNCHSAITSGQGFAATIKAINSMECNGGNTPAVNSRVNYYNTICSQLGVDPGANVSC*

Protein Length: 68

Fln nts: CCTTCAAGACGGCCGTGTGGTTCTGGATGCAGAACTGTCATTCTGCCATAACCTCCGGGCAGGGCTTCGCTGCCACAATTAAAGCCATCAACAGCATGGAATGCAACGGTGGAAACACTCCTGCAGTGAACAGCAGAGTTAATTACTACAATACAATATGTAGCCAGTTGGGTGTGGATCCCGGAGCCAACGTCTCCTGCTAA___ATCTTTTCTCTCTTCATGGCTGCCAAATATATCAATAAAATGCCAAAGATGTCCATGGCTATCCACTAAATAAAATTTGCACTGCACCTCTCGTGCCGTGTGGATATAGATTCTTTCACACATTTAGTTGAAGTGAACGGTTAC

Fln Alignment:

AllPine_b_rep_c67759___FKTAVWFWMQN--CHSAITSGQGFAATIKAINSMECNGGNTPAVNSRVNYYNTICSQLGVDPGANVSC
B8LQM1________________FKTAVWFWMQNSNCHSAITSGQGFGATIKAINSGECNGGNSGEVSSRVNYYNTICSQLGVDPGANVSC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
42		66	33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain