SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206714

Length: 365 nt

UniGene Fasta

>sp_v3.0_unigene206714
CCAACTTCAATATCAATTTCAGTTTCTCACTCAGAGTTTGCATCAGCAAATCATTTCCTATTTCATTTCGTCATGGGCTTTTAGTAATTGTAAAGCACATCGCTAAAGTCGCCTGGCCAACAGTGATGCTAATTTATCCTCTAGCAATTGAAAGTCCTTCGGAGCTGGATGACCAACAGTGGCTTACTTACTGGGTGCTGTACTCATTGATTACCCTTTTTGAGCTTACTTTCTATAAAATTCTTGCCTGGATCCCCATCTGGCCTTATGTAAAACTGGTTCTGCTATTCTGGTTGGTCTTACCAATGTTCAATGGAGCAGCTTACATATATGAGAACTATGTTAGAAAGTTTGTTGTTGCCAAA

Ace file of the UniGene sp_v3.0_unigene206714

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein HVA22, putative n=2 Tax=Ricinus communis RepID=B9S309_RICCO	-	-	2.0e-30	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Protein HVA22, putative	-	-	1.451e-15	-

Source	Gene names
Sma3	At1g69700; At1g74520; At2g42820; At4g24960; At5g50720; At5g62490; F13M23.100; F1M20.20; F7D19.18; GSVIVT00000126001; GSVIVT00018936001; GSVIVT00036995001; HVA22A; HVA22B; HVA22C; HVA22D; HVA22E; HVA22F; K19B1.10; LOC_Os11g30500; LOC_Os11g38920; MFB16.12;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42820.1	HVA22F HVA22-like protein F chr2:17817460-17818301 REVERSE LENGTH=158	8.99999e-40	59%
RefSeq	Arabidopsis thaliana	NP_181810.2	HVA22-like protein f [Arabidopsis thaliana]	1.0e-39	59%
RefSeq	Populus trichocarpa	XP_002299111.1	predicted protein, partial [Populus trichocarpa]	2.0e-38	57%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADA6

Fln msg: Distance to subject end: 63 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 121 - 167

Fln protein: NFNINFSFSLRVCISKSFPISFRHGLLVIVKHIAKVAWPTVMLIYPLAIESPSELDDQQWLTYWVLYSLITLFELTFYKILAWIPIWPYVKLVLLFWLVLPMFNGAAYIYENYVRKFVVAK

Protein Length: 122

Fln nts: CCAACTTCAATATCAATTTCAGTTTCTCACTCAGAGTTTGCATCAGCAAATCATTTCCTATTTCATTTCGTCATGGGCTTTTAGTAATTGTAAAGCACATCGCTAAAGTCGCCTGGCCAACAGTGATGCTAATTTATCCTCTAGCAATTGAAAGTCCTTCGGAGCTGGATGACCAACAGTGGCTTACTTACTGGGTGCTGTACTCATTGATTACCCTTTTTGAGCTTACTTTCTATAAAATTCTTGCCTGGATCCCCATCTGGCCTTATGTAAAACTGGTTCTGCTATTCTGGTTGGTCTTACCAATGTTCAATGGAGCAGCTTACATATATGAGAACTATGTTAGAAAGTTTGTTGTTGCCAAA

Fln Alignment:

AllPine_b_rep_c67379___IVKHIAKVAWPTVMLIYPL-----AIESPSELDDQQWLTYWVLYSLITLFELTFYKILAWIPIWPYVKLVLLFWLVLPMFNGAAYIYENYVRKFV
D5ADA6________________IARHFDTFAGPVVMLLYPLYCSVRAIESPSELDDQQWLTYWVLYSLITLFELSFYKVLAWLPIWPYLKLIVSFWLVLPMFNGAAYIYENYVRKFV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2		90		10	0.903003

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain