SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206211

Length: 428 nt

UniGene Fasta

>sp_v3.0_unigene206211
TAAGAACACAAAGAGACCATTTGGAAGTAGTGCTTCACGTTCAAAAGTAATCTCAGATCTTATTGATTCCGATGTTTGTGGTCCTACGACCCCAAAATCACTTGGAGGTCATCTATATTATGTCACATTTATAGATGATCATTCAAGAGAAGCTAGGGTTTACTCAATGAAATCCAAGGATGAAGTATTTACCAAATTTCAAGAATTCAAAACTGAAGTAGAGAACCTTATAGAAAGGAGAATCAAGATACTAAGGTCTGATAATGGAGGAGAGTATACATCCAAGGGAATCATAGCCTTTTGTAAGGAGTCTGGGATTAAGAGGGAGTTGATAGTCTCATATAATCCGAAACAAAATGGAGTTGCAAAGTGAAAGGAACGATCCATTGAAGAAAGTGTAAAAGTAATGTTGCATGATCAAGATTTAC

Ace file of the UniGene sp_v3.0_unigene206211

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GK15001 gene product from transcript GK15001-RA	-	-	6.0e-27	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Gag-Pol polyprotein	-	-	3.506e-08	-

Source	Gene names
Sma3	F11I4_21; Rtsp-1AA; T15M6.14; T16L24.270; T18I24.5; T20K12.230; T28P6.8; VITISV_001759; VITISV_017889; VITISV_041689;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 142 - 407

Fln protein: KNTKRPFGSSASRSKVISDLIDSDVCGPTTPKSLGGHLYYVTFIDDHSREARVYSMKSKDEVFTKFQEFKTEVENLIERRIKILRSDNGGEYTSKGIIAFCKESGIKRELIVSYNPKQNGVAK*KERSIEESVKVMLHDQDL

Protein Length: 143

Fln nts: TAAGAACACAAAGAGACCATTTGGAAGTAGTGCTTCACGTTCAAAAGTAATCTCAGATCTTATTGATTCCGATGTTTGTGGTCCTACGACCCCAAAATCACTTGGAGGTCATCTATATTATGTCACATTTATAGATGATCATTCAAGAGAAGCTAGGGTTTACTCAATGAAATCCAAGGATGAAGTATTTACCAAATTTCAAGAATTCAAAACTGAAGTAGAGAACCTTATAGAAAGGAGAATCAAGATACTAAGGTCTGATAATGGAGGAGAGTATACATCCAAGGGAATCATAGCCTTTTGTAAGGAGTCTGGGATTAAGAGGGAGTTGATAGTCTCATATAATCCGAAACAAAATGGAGTTGCAAAGTGAAAGGAACGATCCATTGAAGAAAGTGTAAAAGTAATGTTGCATGATCAAGATTTAC

Fln Alignment:

AllPine_b_rep_c63857___RSKVISDLIDSDVCGPTTPKSLGGHLYYVTFIDDHSREARVYSMKSKDEVFTKFQEFKTEVENLIERRIKILRSDNGGEYTSKGIIAFCKESGIKRELIVSYNPKQNGVAK*KERSIEESVKVMLHDQDL
B8LKX7________________RAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain