SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204734

Length: 369 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene204734
ATCAACTTCACCGTTTGGGATGTTGGCGGTCAAGACAAAATCAGACCCTTATGGAGACACTACTTCCAAAACACACAAGGACTCATCTTCGTCGTCGACTCCAACGACAGAGAAAGAGCTTCTGAAGCCGCCGAAGAGCTCAACAAAATGCTCAACGAAGACGAACTCCGAGATGCTGCCGTCTTGGTCTTCGCCAACAAGCAAGATCTTCCCAATGCCATGAGCGTTGCTGAAGTTACCGACAAATTGGGACTCCACTCCCTCAGAAATCGAAAATGGTACATCCAATCTACCTGTGCTACATCTGGAGACGGTCTCTACGAGGGACTCGATTGGCTCTCGAACGTTCTCTCTGGAAAATGAGAACAC

Ace file of the UniGene sp_v3.0_unigene204734 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor 1 n=3 Tax=Dictyosteliida RepID=ARF1_DICDI	-	-	0.0	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	ADP-ribosylation factor	-	-	9.134e-27	-

Source	Gene names
Sma3	ARF; ARF1; ARF2-A; ARF2-B; ARF3; ARFA1-A; ARFA1-D; ARFA1A; ARFA1B; ARFA2-A; ARFA2-B; ARL1; ARL5; AT3G62290; Arf; Arf1; ArfA11; ArfA12; ArfA13; ArfA14; ArfA15; ArfB1A1; ArfB1B1; ArfB1B2; ArfB21; ArfB22; ArfB23; ArfM11; ArfM12; ArfM13; Arl1A1; Arl1A2; Arl5A

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G23490.1	ATARFA1A, ATARF1, ATARF, ARF1 ADP-ribosylation factor 1 chr1:8337232-8338373 FORWARD LENGTH=181	84%
RefSeq	Arabidopsis thaliana	NP_177206.1	ADP-ribosylation factor 2 [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002314987.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPS8

Fln msg: your sequence is shorter than subject: 121 - 181

Fln protein: INFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERASEAAEELNKMLNEDELRDAAVLVFANKQDLPNAMSVAEVTDKLGLHSLRNRKWYIQSTCATSGDGLYEGLDWLSNVLSGK*

Protein Length: 122

Fln nts: ATCAACTTCACCGTTTGGGATGTTGGCGGTCAAGACAAAATCAGACCCTTATGGAGACACTACTTCCAAAACACACAAGGACTCATCTTCGTCGTCGACTCCAACGACAGAGAAAGAGCTTCTGAAGCCGCCGAAGAGCTCAACAAAATGCTCAACGAAGACGAACTCCGAGATGCTGCCGTCTTGGTCTTCGCCAACAAGCAAGATCTTCCCAATGCCATGAGCGTTGCTGAAGTTACCGACAAATTGGGACTCCACTCCCTCAGAAATCGAAAATGGTACATCCAATCTACCTGTGCTACATCTGGAGACGGTCTCTACGAGGGACTCGATTGGCTCTCGAACGTTCTCTCTGGAAAATGA___GAACAC

Fln Alignment:

AllPine_b_rep_c59087___INFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERASEAAEELNKMLNEDELRDAAVLVFANKQDLPNAMSVAEVTDKLGLHSLRNRKWYIQSTCATSGDGLYEGLDWLSNVLSGK
B8LPS8________________ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVAEARDELHRMLNEDELRDAVLLVFANKQDLPNAMTAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain