SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204472

Length: 572 nt

UniGene Fasta

>sp_v3.0_unigene204472
TTTGGATATTCCCAATGTGGACTGGATCGTGCAGTATGACCCTCCTGATGATCCCAAGGAGTACATTCACCGCGTAGGTCGAACGGCAAGAGGCACCAAGTCTGTCGGTCATGCCCTGCTCTTCCTGCTCCCTGAGGAGTTGAAATTTCTCAGCTACCTGAAGAATGCGAAGGTGGAACCAAAGGAGCTTGAGTTCCCCCCTCACAAGGTGGCCAATATTGGTTCTCAGCTGACAAAGCTGATAGAGACGAACTACTATCTGCACAAGAGTGCTAAGGATGCTTATCGATCCTACCTGTTGAGTTATGCTTCCCACTCGCACAAGGACATCTTCAATGTGCAGGAGATTGATCTGCAGGGTGTGGGACGAGCCTTTGGCTTCTCCGTTCCTCCTAGAGTGGATTTGAACTTTGCAGCTCGTGGTGACAAGAAGAGTCACACCAAACGCCAAAAGACTGACGACGGCAGTGGTGGTAAGGGTGCCAAGTTTAGTAGTCAGTCAGGACATGCATTCAGTGCAGAGAATCCCTACGGGAAGAGAGCTGCCGATGATAAGAGACAGTTCTCACGAT

Ace file of the UniGene sp_v3.0_unigene204472

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] emb\|CAL55992.1\| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	DEAD-box ATP-dependent RNA helicase 27	-	-	1.176e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	5.657e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	5.657e-09	%
Sma3	Lipopolysaccharide biosynthesis	00540	5.657e-09	%
Sma3	Folate biosynthesis	00790	5.657e-09	%
Sma3	Metabolic pathways	01100	5.657e-09	%

Source	Gene names
Sma3	At3g18600; At5g65900; CHLREDRAFT_113060; F6H11.20; GSVIVT00017610001; K14B20.7; K24M9.9; LOC_Os03g58810; LOC_Os06g34420; MICPUCDRAFT_22865; MICPUN_87736; OSJNBa0001B21.18; OSJNBa0087C10.12; OSTLU_25999; Os03g0802700; Os06g0535100; OsI_13943; OsI_23250; Ot

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G18600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:6399724-6403007 REVERSE LENGTH=568	9.80909e-45	51%
RefSeq	Arabidopsis thaliana	NP_188490.1	DEAD-box ATP-dependent RNA helicase 51 [Arabidopsis thaliana]	9.80909e-45	51%
RefSeq	Populus trichocarpa	XP_002298317.1	predicted protein [Populus trichocarpa]	0.0	58%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR69

Fln msg: Distance to subject end: 70 aas, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning, your sequence is shorter than subject: 190 - 259

Fln protein: LDIPNVDWIVQYDPPDDPKEYIHRVGRTARGTKSVGHALLFLLPEELKFLSYLKNAKVEPKELEFPPHKVANIGSQLTKLIETNYYLHKSAKDAYRSYLLSYASHSHKDIFNVQEIDLQGVGRAFGFSVPPRVDLNFAARGDKKSHTKRQKTDDGSGGKGAKFSSQSGHAFSAENPYGKRAADDKRQFSR

Protein Length: 191

Fln nts: TTTGGATATTCCCAATGTGGACTGGATCGTGCAGTATGACCCTCCTGATGATCCCAAGGAGTACATTCACCGCGTAGGTCGAACGGCAAGAGGCACCAAGTCTGTCGGTCATGCCCTGCTCTTCCTGCTCCCTGAGGAGTTGAAATTTCTCAGCTACCTGAAGAATGCGAAGGTGGAACCAAAGGAGCTTGAGTTCCCCCCTCACAAGGTGGCCAATATTGGTTCTCAGCTGACAAAGCTGATAGAGACGAACTACTATCTGCACAAGAGTGCTAAGGATGCTTATCGATCCTACCTGTTGAGTTATGCTTCCCACTCGCACAAGGACATCTTCAATGTGCAGGAGATTGATCTGCAGGGTGTGGGACGAGCCTTTGGCTTCTCCGTTCCTCCTAGAGTGGATTTGAACTTTGCAGCTCGTGGTGACAAGAAGAGTCACACCAAACGCCAAAAGACTGACGACGGCAGTGGTGGTAAGGGTGCCAAGTTTAGTAGTCAGTCAGGACATGCATTCAGTGCAGAGAATCCCTACGGGAAGAGAGCTGCCGATGATAAGAGACAGTTCTCACGAT

Fln Alignment:

AllPine_b_rep_c58736___QYDPPDDPKEYIHRVGRTARGTKSVGHAXXXXXXXXXXXXSYLKNAKVEPKELEFPPHKVANIGSQLTKLIETNYYLHKSAKDAYRSYLLSYASHSHKDIFNVQEIDLQGVGRAFGFSVPPRVDLNFAARGDKKSHTKRQKTDD
B8LR69________________EVDCPEDVPSYIHRVGRTTRFNAG-GHSVAFFMPSEMKMLMQLHEVKIPVKVIKANASKLQSVSAPLAALLSKDPDLKYMAQRAFVTYLSSIHLRPYKAIFDVSKLPIEDYSVSLGLPTAPRI------RFLKKSGSKLKNMED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain