SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204278

Length: 297 nt

UniGene Fasta

>sp_v3.0_unigene204278
ATTGGAACTGATAATGCATTCGCACTAAGAGGTCAGGCTGCTATAGCACAAGCTGTTCTTGCATACAAACTCTATCAGGAAAAGTTCCGTGGCCCTCGATGGGAAGCTCTTGAAAAAACGAGGGGCAAGAAAGCAACGCATAATGTGGGCCTCAACGAATGTGAAAATCCAGCATCTCCAGATACGCTATATGTTAATCTCTAATTGGTCCTGAACTATCATACAATGCCAGATCTTGCACTCCAGGCATTCATGGACCATGGGAAGGTTTCTCGAACTATCGATGCAAATTTTGAA

Ace file of the UniGene sp_v3.0_unigene204278

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transaldolase n=1 Tax=Dimocarpus longan RepID=B7UCK2_9ROSI	-	-	3.0e-20	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Transaldolase	-	-	1.076e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transaldolase.	EC:2.2.1.2	-	2.302e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	2.302e-07	%
Sma3	Biosynthesis of phenylpropanoids	01061	2.302e-07	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	2.302e-07	%
Sma3	Biosynthesis of plant hormones	01070	2.302e-07	%
Sma3	Metabolic pathways	01100	2.302e-07	%
Sma3	Biosynthesis of secondary metabolites	01110	2.302e-07	%

Source	Gene names
Sma3	At5g13420; GSVIVT00006209001; OSJNBa0093F16.14; Os01g0926300; OsI_05010; OsJ_04614; P0482D04.14; PHYPADRAFT_107421; POPTRDRAFT_640120; POPTRDRAFT_646955; PotTal1; RCOM_1438460; T22N19_70; TAL;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	GO:0004801	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transaldolase	IPR001585	-	-
Sma3	Transaldolase type 2	IPR004732	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3		IPR014634	-	-
Sma3	Transaldolase, active site	IPR018225	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13420.1	Aldolase-type TIM barrel family protein chr5:4302080-4304212 REVERSE LENGTH=438	4.0e-24	56%
RefSeq	Arabidopsis thaliana	NP_196846.1	transaldolase [Arabidopsis thaliana]	5.0e-24	56%
RefSeq	Populus trichocarpa	XP_002304636.1	predicted protein [Populus trichocarpa]	2.0e-25	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKR1

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 99 - 444

Fln protein: IGTDNAFALRGQAAIAQAVLAYKLYQEKFRGPRWEALEKTRGKKATHNVGLNECENPASPDTLYVNL*LVLNYHTMPDLALQAFMDHGKVSRTIDANFE

Protein Length: 100

Fln nts: ATTGGAACTGATAATGCATTCGCACTAAGAGGTCAGGCTGCTATAGCACAAGCTGTTCTTGCATACAAACTCTATCAGGAAAAGTTCCGTGGCCCTCGATGGGAAGCTCTTGAAAAAACGAGGGGCAAGAAAGCAACGCATAATGTGGGCCTCAACGAATGTGAAAATCCAGCATCTCCAGATACGCTATATGTTAATCTCTAATTGGTCCTGAACTATCATACAATGCCAGATCTTGCACTCCAGGCATTCATGGACCATGGGAAGGTTTCTCGAACTATCGATGCAAATTTTGAA

Fln Alignment:

AllPine_b_rep_c58425___IGTDNAFALRGQAAIAQAVLAYKLYQEKFRGPRWEALEKTRGKKATHNVGLNECENPASPDT-XXXXXXXXXXXHTMPDLALQAFMDHGKVSRTIDANFE
B8LKR1________________IGTDDALALRGKAATAQAVLAYKLYQEKFSGPRWEALEKRGARKQRVLWASTSVKNPAYPDTLYVNPLIGPDSVTTMPDQALQAFMDHGNVSRTIDANFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain