SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204007

Length: 263 nt

UniGene Fasta

>sp_v3.0_unigene204007
AAAATGGGTGGCAGAGATCAGATTACCCAGAAACAGAAACAGGCTTTGGCTTGGGACTTTTGATACAGCAGAGGATGCAGCATTGGCCTATGACAGGGCTGCTTACAGGTTAAGAGGTGAGTATGCTCGCTTGAATTTTCCAGGTTTAAAACATCAACTGCAATTGAGTCATGATACTGATAGGCCAACCCCATCCTCTACTTCCAATCAGGATTCAATTAGAGCCATTAGCAATCCATCTGGACAGTTTTCTGCTATGCAAA

Ace file of the UniGene sp_v3.0_unigene204007

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=A9PL93_POPTR	-	-	6.0e-12	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	AP2/ERF domain-containing transcription factor	-	-	4.47e-26	-

Source	Gene names
Sma3	ABI4-1; At1g22190; At1g36060; At1g64380; At1g78080; At2g20880; At2g22200; At4g11140; At4g13620; At4g28140; At4g39780; At5g13330; At5g21960; At5g65130; C-EF3; C-EF4; C-EF7; CRF1; DBF; DBF2; DBP2; DRE; DREB; DREB1; DREB11; DREB12; DREB13; DREB14; DREB15; DR

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	transcription factor import into nucleus	GO:0042991	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22190.1	Integrase-type DNA-binding superfamily protein chr1:7836245-7837030 FORWARD LENGTH=261	1.0e-15	71%
RefSeq	Arabidopsis thaliana	NP_173638.1	ethylene-responsive transcription factor ERF058 [Arabidopsis thaliana]	1.0e-15	71%
RefSeq	Populus trichocarpa	XP_002336662.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	4.0e-17	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ35

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 87 - 415

Fln protein: KWVAEIRLPRNRNRLWLGTFDTAEDAALAYDRAAYRLRGEYARLNFPGLKHQLQLSHDTDRPTPSSTSNQDSIRAISNPSGQFSAMQ

Protein Length: 88

Fln nts: AAAATGGGTGGCAGAGATCAGATTACCCAGAAACAGAAACAGGCTTTGGCTTGGGACTTTTGATACAGCAGAGGATGCAGCATTGGCCTATGACAGGGCTGCTTACAGGTTAAGAGGTGAGTATGCTCGCTTGAATTTTCCAGGTTTAAAACATCAACTGCAATTGAGTCATGATACTGATAGGCCAACCCCATCCTCTACTTCCAATCAGGATTCAATTAGAGCCATTAGCAATCCATCTGGACAGTTTTCTGCTATGCAAA

Fln Alignment:

AllPine_b_rep_c57932___KWVAEIRLPRNRNRLWLGTFDTAEXXXXXXXXXXXXXXGEYARLNFPGLKHQLQ
B8LQ35________________KWVAEIRLPRDRTRLWLGTFDTAEEAAMAYDKAAYRLRGEYARLNFPHLKRHLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain