SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203528

Length: 482 nt

UniGene Fasta

>sp_v3.0_unigene203528
ATTCAGTGGCACTGCCAAGTTACAGCAAACAATCTCATTCTCATTCATCCCGCAGATATTTAGTGGCAGAAGTGTAGTAGCTACTTCCACCTCTGCAAGTCCCGACTTTCAAATACTCTTGCCATCACAATCCCTCCTTTACAGACTCCGAACTTTTACCAGCACGTCCTCAGTTTCATTTTTCCCTAAAATCCCGCCATGACTAAACCCTCGCAAAACCAGAGTCGCCACAGCAGTCCCGAATGCCTCTCACTGAAGTCCGGGAAGTTCAACGGAATCCGAAGGAGGAAATGGGGTAAATGGGTCTCGGAAATTCGAATGCCCAATTCCAGCGGTAGAATTTGGCTGGGCTCCTATGACTCTCCCGAAAAGGCTGCCCGCGCATACGATTTTGCTGTGTACTGCCTCAGAGGATCCAACGCCAAGCTCAATTTCCCCCACTCCCCGCCGAAAATTCTCAACTCTTCGTCTCTATCGCCGGC

Ace file of the UniGene sp_v3.0_unigene203528

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=A9PLA3_POPTR	-	-	1.0e-25	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	AP2/ERF domain-containing transcription factor	-	-	0.0	-

Source	Gene names
Sma3	AP22.2; At1g19210; At1g21910; At1g44830; At1g46768; At1g71450; At1g74930; At1g77640; At2g23340; At3g50260; At4g31060; At4g36900; At5g21960; At5g67190; B1172G12.12; B1172G12.14; B1172G12.5; B1172G12.8; C-EF1; C-EF2; C-EF5; C-EF8; C7A10.460; DBP; DREB; DREB

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR001476	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19210.1	Integrase-type DNA-binding superfamily protein chr1:6626973-6627530 REVERSE LENGTH=185	5.0e-32	67%
RefSeq	Arabidopsis thaliana	NP_173355.3	ethylene-responsive transcription factor ERF017 [Arabidopsis thaliana]	6.0e-32	67%
RefSeq	Populus trichocarpa	XP_002308508.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	4.0e-33	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQM1

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 94 - 177

Fln protein: MTKPSQNQSRHSSPECLSLKSGKFNGIRRRKWGKWVSEIRMPNSSGRIWLGSYDSPEKAARAYDFAVYCLRGSNAKLNFPHSPPKILNSSSLSP

Protein Length: 95

Fln nts: ATTCAGTGGCACTGCCAAGTTACAGCAAACAATCTCATTCTCATTCATCCCGCAGATATTTAGTGGCAGAAGTGTAGTAGCTACTTCCACCTCTGCAAGTCCCGACTTTCAAATACTCTTGCCATCACAATCCCTCCTTTACAGACTCCGAACTTTTACCAGCACGTCCTCAGTTTCATTTTTCCCTAAAATCCCGCC_-_ATGACTAAACCCTCGCAAAACCAGAGTCGCCACAGCAGTCCCGAATGCCTCTCACTGAAGTCCGGGAAGTTCAACGGAATCCGAAGGAGGAAATGGGGTAAATGGGTCTCGGAAATTCGAATGCCCAATTCCAGCGGTAGAATTTGGCTGGGCTCCTATGACTCTCCCGAAAAGGCTGCCCGCGCATACGATTTTGCTGTGTACTGCCTCAGAGGATCCAACGCCAAGCTCAATTTCCCCCACTCCCCGCCGAAAATTCTCAACTCTTCGTCTCTATCGCCGGC

Fln Alignment:

AllPine_b_rep_c56892___MTKPSQNQSRHSSPECLSLKSGKFNGIRRRKWGKWVSEIRMPNSSGRIWLGSYDSPEKAARAYDFAVYCLRGSNAKLNFPHSPPKILNSSSLSP
A9NQM1________________MTKPSPNQNSHSRPETRSLKSRQFKGIRMRKWGKWVSEIRMPYCTGRIWLGSYDTPEKAARAYDFAAFCLRGSKAKLNFPLFTPKIPCASSLSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain