SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203037

Length: 293 nt

UniGene Fasta

>sp_v3.0_unigene203037
CAGATTCCAGCCTGGACAAATCTTACTATAGTCGGCTCATATCTGGGTGTCCTAAATCGGGAGGAGATAATAACTTATCCCCATTGGATTTTGTGAGTCCTACGAAATTCGACAACTACTACTTCAAGAACTTGCTGAGCGGGTATGGACTGTTGAACTCAGACGAAGAATTGTTCGCCAAGGGCGAAGGGAAGACCGTGGAAACCGTGAAAGCTTACGCAGAAAACGAAGAGCTCTTTCTCGAACAGTTTGCAGAATCGATGGTGAAGATGGGGAACATTAGTCCTCTTACA

Ace file of the UniGene sp_v3.0_unigene203037

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase 9, putative n=1 Tax=Ricinus communis RepID=B9R800_RICCO	-	-	9.0e-29	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Peroxidase	-	-	2.64e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	9.973e-34	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	9.973e-34	%
Sma3	Methane metabolism	00680	9.973e-34	%
Sma3	Phenylpropanoid biosynthesis	00940	9.973e-34	%
Sma3	Biosynthesis of phenylpropanoids	01061	9.973e-34	%
Sma3	Metabolic pathways	01100	9.973e-34	%
Sma3	Biosynthesis of secondary metabolites	01110	9.973e-34	%

Source	Gene names
Sma3	AP22.54; AoPOX1; At1g44970; At2g18140; At2g18150; At3g50990; At4g36430; At5g66390; C7A10.930; DIDI 6G-3B; F24M12.30; F27F5.6; F8D23.7; F8D23.8; GSVIVT00014550001; GSVIVT00023970001; GSVIVT00036874001; GSVIVT00037458001; K1F13.4; K1L20.16; LOC_Os03g32050;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G44970.1	Peroxidase superfamily protein chr1:17002237-17003563 FORWARD LENGTH=346	7.0e-34	62%
RefSeq	Arabidopsis thaliana	NP_175117.1	peroxidase 9 [Arabidopsis thaliana]	9.0e-34	62%
RefSeq	Populus trichocarpa	XP_002300745.1	predicted protein, partial [Populus trichocarpa]	4.0e-35	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPA0

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 97 - 344

Fln protein: DSSLDKSYYSRLISGCPKSGGDNNLSPLDFVSPTKFDNYYFKNLLSGYGLLNSDEELFAKGEGKTVETVKAYAENEELFLEQFAESMVKMGNISPLT

Protein Length: 98

Fln nts: CAGATTCCAGCCTGGACAAATCTTACTATAGTCGGCTCATATCTGGGTGTCCTAAATCGGGAGGAGATAATAACTTATCCCCATTGGATTTTGTGAGTCCTACGAAATTCGACAACTACTACTTCAAGAACTTGCTGAGCGGGTATGGACTGTTGAACTCAGACGAAGAATTGTTCGCCAAGGGCGAAGGGAAGACCGTGGAAACCGTGAAAGCTTACGCAGAAAACGAAGAGCTCTTTCTCGAACAGTTTGCAGAATCGATGGTGAAGATGGGGAACATTAGTCCTCTTACA

Fln Alignment:

AllPine_b_rep_c55704___DSSLDKSYYSRLISGCPKSGGDNNLSPLDFVSPTKFDNYYFKNLLSGYGLLNSDEELFAKGEGKTVETVKAYAENEELFLEQFAESMVKMGNISPLT
B8LPA0________________DFTLDKSYATQLKSGCPKSGGDNNLFPLDFVSPTKFDNYYFKNLLSGHGLLNTDEELFSKGQAKTRKLVKEYAENEELFLKQFALSMVKMGNIKPLT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
186		33	66		0.997454
191		33	66		0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain