SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202917

Length: 241 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene202917
AGGATCGTCCACGAGGGGAGCAAAAAATATTGCTTGGTTCTCAGCATATACTGGAGATGGCGGATGTGAGCTTCATACTAGGTGTTGTAGGAAATGTGATATCGCTCCTCGTTTTCATCTCGCCGATGCAGACATTTTGGCGAATAGTCAAGAATAAGTCCACACAGAACTTCAAATCTCTCCCTTATATTTGCACACTGTTGAGCACTTTGCTATGGACATATTATGGATTAATCAAGCC

Ace file of the UniGene sp_v3.0_unigene202917 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bidirectional sugar transporter SWEET17 n=3 Tax=Arabidopsis RepID=SWT17_ARATH	-	-	5.0e-19	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Cytochrome c oxidoreductase	-	-	1.378e-13	-

Source	Gene names
Sma3	At3g16690; At4g15920; At5g13170; GSVIVT00022682001; GSVIVT00033013001; LOC_Os03g22200; OsI_11516; OsJ_10795; POPTRDRAFT_240504; POPTRDRAFT_240507; POPTRDRAFT_570771; POPTRDRAFT_596138; RCOM_0681600; RCOM_1433870; T19L5_130; VITISV_022457;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15920.1	SWEET17, AtSWEET17 Nodulin MtN3 family protein chr4:9030742-9033343 REVERSE LENGTH=241	9.0e-26	66%
RefSeq	Arabidopsis thaliana	NP_193327.5	nodulin MtN3-like protein [Arabidopsis thaliana]	1.0e-25	66%
RefSeq	Populus trichocarpa	XP_002318981.1	predicted protein, partial [Populus trichocarpa]	7.0e-25	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABP0

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 61 - 335

Fln protein: MADVSFILGVVGNVISLLVFISPMQTFWRIVKNKSTQNFKSLPYICTLLSTLLWTYYGLIK

Protein Length: 62

Fln nts: AGGATCGTCCACGAGGGGAGCAAAAAATATTGCTTGGTTCTCAGCATATACTGGAG_-_ATGGCGGATGTGAGCTTCATACTAGGTGTTGTAGGAAATGTGATATCGCTCCTCGTTTTCATCTCGCCGATGCAGACATTTTGGCGAATAGTCAAGAATAAGTCCACACAGAACTTCAAATCTCTCCCTTATATTTGCACACTGTTGAGCACTTTGCTATGGACATATTATGGATTAATCAAGCC

Fln Alignment:

AllPine_b_rep_c55270___MADVSFILGVVGNVISLLVFISPMQTFWRIVKNKSTQNFKSLPYICTLLSTLLWTYYGLIK
D5ABP0________________MADVSFIIGVVGNVISLLLFISPVKTFWRIVKNKSTQDFKPLPYICTLLSTSLWTYYGLIK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
151		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain