SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202906

Length: 435 nt

UniGene Fasta

>sp_v3.0_unigene202906
TTCATAAAATTCCCGATCACAACAATAGCAACATGTCTGGAGGCATAGCTCGAGGTCGACTTACTGAGGAGCGCAAGGCCTGGCGTAAGAACCATCCCCATGTATTTAGACCTGACACTCAGCCAGATGGTTCCCTTAACTTAATGGTGTGGCAATGCATCATTCCTGGCAAATCTGGGACGGATTGGGAGGGTGGTTACTTTCCTCTAACAATTCATTTCAGTGAGGATTACCCAAGTAAACCTCCAAAATGCAAGTTCCCTCAAGGGTTTTTTCCATCCTAATGTTTATCCATCAGGAACTGTTTGTCTGTCTATCCTTAATGAAGATTCTGGATGGCGCCCAGCCATTACTGTGAAGCAAATACTTGTAGGTATTCAGGATCTTTTAGATCAGCCAAATCCAGGTGATCCTGCACAAACGGATGGCTACCAT

Ace file of the UniGene sp_v3.0_unigene202906

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 I n=4 Tax=Andropogoneae RepID=B6SLY7_MAIZE	-	-	6.02558e-44	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Ubiquitin carrier protein	-	-	2.8026e-45	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	1.25136e-42	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		1.25136e-42	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		1.25136e-42	%

Source	Gene names
Sma3	10D10; Ahus5; At3g57870; CHLREDRAFT_135149; CHLREDRAFT_57440; GSVIVT00014866001; GSVIVT00019543001; LOC_Os03g03130; LOC_Os10g39120; MICPUCDRAFT_14889; MICPUCDRAFT_49619; MICPUN_63982; MICPUN_93648; MICPUN_97341; OJ1126B12.12; OSJNBa0064M23.9; OSJNBb0060I0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	SUMO ligase activity	GO:0019789	Molecular Function	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	protein sumoylation	GO:0016925	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G57870.1	AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 sumo conjugation enzyme 1 chr3:21428831-21430110 REVERSE LENGTH=160	72%
RefSeq	Arabidopsis thaliana	NP_191346.1	SUMO-conjugating enzyme SCE1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002307279.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS32

Fln msg: Overlapping hits, possible frame ERROR between 302 and 265, Distance to subject end: 24 aas, your sequence is shorter than subject: 135 - 160

Fln protein: MSGGIARGRLTEERKAWRKNHPHVFRPDTQPDGSLNLMVWQCIIPGKSGTDWEGGYFPLTIHFSEDYPSKPPKCKFPxxxxxxxxxxxxxxVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPGDPAQTDGYH

Protein Length: 136

Fln nts: TTCATAAAATTCCCGATCACAACAATAGCAAC_-_ATGTCTGGAGGCATAGCTCGAGGTCGACTTACTGAGGAGCGCAAGGCCTGGCGTAAGAACCATCCCCATGTATTTAGACCTGACACTCAGCCAGATGGTTCCCTTAACTTAATGGTGTGGCAATGCATCATTCCTGGCAAATCTGGGACGGATTGGGAGGGTGGTTACTTTCCTCTAACAATTCATTTCAGTGAGGATTACCCAAGTAAACCTCCAAAATGCAAGTTCCCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTTGTCTGTCTATCCTTAATGAAGATTCTGGATGGCGCCCAGCCATTACTGTGAAGCAAATACTTGTAGGTATTCAGGATCTTTTAGATCAGCCAAATCCAGGTGATCCTGCACAAACGGATGGCTACCAT

Fln Alignment:

AllPine_b_rep_c55229___MSGGIARGRLTEERKAWRKNHPHVF--RPDTQPDGSLNLMVWQCIIPGKSGTDWEGGYFPLTIHFSEDYPSKPPKCKFPxxxxxxxxxxxxxxxxxxxxEDSGWRPAITVKQILVGIQDLLDQPNPGDPAQTDGYH
A9NS32________________MSGGIARGRLAEERKAWRKNHPHGFVARPDTQPDGSLNLMVWQCIIPGKSGTDWEGGYFPLTINFSEDYPSKPPKCKFPxxxxxxxxxxxxxxxxxxxxEDSGWRPAITVKQILIGIQDLLDQPNPGDPAQTDGYH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain