SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202758

Length: 387 nt

UniGene Fasta

>sp_v3.0_unigene202758
ATTATAATCTGAAGTTATGTTACAGACAAACACATAGTAGAATCGTTCCTTTCTGACCTTGATACTTGAAGTTTTCGAGTGTTGGAATCCATATGGGTGCCTGGGATCATTTCTCCGATTATTTCTCAGATTTCTTTGGCAAGAGGAAAAAATCCAAAAAGAGAAAGGAAATTAAGACCGTGGAATTGAAAGTAAGAATGGACTGTGATGGCTGTGAACGCAAAGTAAGAAAGGCTCTGTCTTCTATGTCCGGAGTTCAGTCGGTGGAGGTAGACAGAAAACTGCAAAAAGTGACAGTCACTGGATTAGTGGAGGCCAACAAGGTGCTGAAAAAAGTGAATGCAACAGGAAAAGAGCAGAAATGTGGCCATATGTGCCATACAATTT

Ace file of the UniGene sp_v3.0_unigene202758

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heavy-metal-associated domain-containing protein [Arabidopsis thaliana] gb\|AAG51694.1\|AC016972_13 putative isoprenylated protein; 28702-28078 [Arabidopsis thaliana] gb\|AAM65427.1\| putative isoprenylated protein [Arabidopsis thaliana] dbj\|BAC42520.1\| putat	-	-	3.0e-23	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Metal ion binding protein, putative	-	-	5.675e-16	-

Source	Gene names
Sma3	AT4g08570; AT4g39700; At1g22990; At1g71050; At1g71050/F23N20_4; At4g08570; At4g39700; At5g17450; F23N20.4; GSVIVT00000472001; GSVIVT00015277001; GSVIVT00019438001; GSVIVT00022346001; GSVIVT00030458001; H0211F06-OSIGBa0153M17.4; K3M16_20; LOC_Os03g06080; L

Source	GOs	Term	Type	e value	Identity
Sma3	metal ion binding	GO:0046872	Molecular Function	0.0	-
Sma3	metal ion transport	GO:0030001	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	5-AMP-activated protein kinase, beta subunit, interaction domain	IPR006828	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G71050.1	HIPP20 Heavy metal transport/detoxification superfamily protein chr1:26803322-26803946 REVERSE LENGTH=152	3.0e-27	59%
RefSeq	Arabidopsis thaliana	NP_177261.1	heavy-metal-associated domain-containing protein [Arabidopsis thaliana]	4.0e-27	59%
RefSeq	Populus trichocarpa	XP_002315894.1	predicted protein [Populus trichocarpa]	1.0e-27	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPH2

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 98 - 148

Fln protein: MGAWDHFSDYFSDFFGKRKKSKKRKEIKTVELKVRMDCDGCERKVRKALSSMSGVQSVEVDRKLQKVTVTGLVEANKVLKKVNATGKEQKCGHMCHTI

Protein Length: 99

Fln nts: ATTATAATCTGAAGTTATGTTACAGACAAACACATAGTAGAATCGTTCCTTTCTGACCTTGATACTTGAAGTTTTCGAGTGTTGGAATCCAT_-_ATGGGTGCCTGGGATCATTTCTCCGATTATTTCTCAGATTTCTTTGGCAAGAGGAAAAAATCCAAAAAGAGAAAGGAAATTAAGACCGTGGAATTGAAAGTAAGAATGGACTGTGATGGCTGTGAACGCAAAGTAAGAAAGGCTCTGTCTTCTATGTCCGGAGTTCAGTCGGTGGAGGTAGACAGAAAACTGCAAAAAGTGACAGTCACTGGATTAGTGGAGGCCAACAAGGTGCTGAAAAAAGTGAATGCAACAGGAAAAGAGCAGAAATGTGGCCATATGTGCCATACAATTT

Fln Alignment:

AllPine_b_rep_c54673___YFSDFFGXXXXXXXXXEIKTVELKVRMDCDGCERKVRKALSSMSGVQSVEVDRKLQKVTVTGLVEANKVLKKVNATGK
B8LPH2________________YFSDLFGRRKIIKKRKQIKTVELKVRMDCDGCERKVRKALASMSGVQSVEIDRKLQKVTVTGYVEANKVLKKVKESGK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
230	80		20		0.9955
234			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain