SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene201898

Length: 957 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene201898

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin 2 n=1 Tax=Zinnia violacea RepID=Q9LLB2_ZINEL	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Expansin	-	-	-

Source	Gene names
Sma3	AT1G69530; At1g26770; At1g69530; At2g39700; At2g40610; At3g55500; At5g02260; At5g05290; At5g56320; CDK3; CDK4; CDK5; CDK6; CDK7; Cs-EXPA1; Cs-EXPA2; EXP; EXP03; EXP1; EXP10; EXP11; EXP13; EXP14; EXP15; EXP16; EXP18; EXP2; EXP3; EXP4; EXP5; EXP6; EXP7; EXP

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	syncytium formation	GO:0006949	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	plant-type cell wall loosening	GO:0009828	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40610.1	ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11, EXPA8 expansin A8 chr2:16949121-16950472 REVERSE LENGTH=253	78%
RefSeq	Arabidopsis thaliana	NP_181593.1	expansin A8 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002325925.1	hypothetical protein POPTRDRAFT_665631 [Populus trichocarpa]	83%

Full-Lengther Next Prediction

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
157		75		25	0.996473
202		83		16	0.994513
205		60		40	1.0
214	40			60	1.0
229	80		20		0.995493
233	80	20			0.995493
235	16	50		33	1.0
241	80			20	0.995493
246	20		80		0.995493
247	80		20		0.995493
248	80		20		0.995493
256		40		60	1.0
259		16		83	0.994523
262	80	20			0.995493
268	16		83		0.994517
278	50		50		1.0
280	60	40			1.0
289	16		83		0.994514
291		20	80		0.995493
298	40			60	1.0
301	83	16			0.994512
302	16		83		0.994512
304			16	83	0.994512
313	16		83		0.994512
316		83		16	0.994512
323	14	85			0.993534
340	14		85		0.993535
343	16		83		0.994512
364		50		50	1.0
370		80	20		0.995494
382	50	25	25		0.995533
399		75	25		0.996474
409		33		66	0.997458
424		66		33	0.997452
461		20		80	0.995493
469			80	20	0.995493
478		80	20		0.995494
491	20			80	0.995493
496		20		80	0.995493
510		20		80	0.995493
512	20		80		0.995493
529		80	20		0.995493
533		80		20	0.995493
556	80		20		0.995493
569		20	80		0.995493
571			20	80	0.995493
577		20		80	0.995493
581		20	80		0.995493
582	20	80			0.995493
586		20		80	0.995496
588			20	80	0.995497
589		20		80	0.995499
593		60		40	1.0
595		80		20	0.995493
597			60	40	1.0
656	66	33			0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain