SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene201466

Length: 465 nt

UniGene Fasta

>sp_v3.0_unigene201466
TCTGTCAATACTATGTGGAAAGGGAGAGGACCATATATCAATGACAACAGCAAGAGGGACACCAGGATATGTTGCACCAGAGGTGTGTGACGGTGCTCTGGGCCCTGTTACAGATAAATCGGATGTCTATAGTTTTGGAATGCTTTTGCTAGAGGTTGTTGGGGGAAGAAAGAATATCGATCCCCTGGTGAGCAGTCCGAGTCGGTTCTATTATCCTGAATGGGCTTTCAAGATGCTTCAGAATGAGGAGCTGGGGATGACATTGGGAGGACGAAGTGCAGAAGAAATTGAAGCAGAAGATGTGGAGGAGGCGAGGAGGCTGATGACTAAAGTTGGGCTCTGGTGCATCCAGTACAAATCCACAGATCGTCCATGTATGAGCAGGGTTGTTCAAATGTTGGAAGGAAATGGAGGCAACGTGAGCAACCCTCCTTTTCCTCTCAATTGCTTCTTGGCTGCATCTAG

Ace file of the UniGene sp_v3.0_unigene201466

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like kinase ARK1AS [Triticum aestivum]	-	-	3.0e-26	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Receptor serine/threonine kinase, putative	-	-	1.832e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	5.056e-07	-

Source	Gene names
Sma3	8ARK1; At5g38260; F20P5.3; GSVIVT00004961001; GSVIVT00004966001; GSVIVT00005230001; GSVIVT00006443001; GSVIVT00006445001; GSVIVT00006446001; GSVIVT00007775001; GSVIVT00007873001; GSVIVT00007885001; GSVIVT00007932001; GSVIVT00010087001; GSVIVT00010233001;

Source	GOs	Term	Type	Identity
Sma3	protein kinase CK2 complex	GO:0005956	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein kinase CK2 regulator activity	GO:0008605	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR014045	-	-
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327951.1	predicted protein, partial [Populus trichocarpa]	1.0e-38	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 154 - 431

Fln protein: LSILCGKGEDHISMTTARGTPGYVAPEVCDGALGPVTDKSDVYSFGMLLLEVVGGRKNIDPLVSSPSRFYYPEWAFKMLQNEELGMTLGGRSAEEIEAEDVEEARRLMTKVGLWCIQYKSTDRPCMSRVVQMLEGNGGNVSNPPFPLNCFLAAS

Protein Length: 155

Fln nts: TCTGTCAATACTATGTGGAAAGGGAGAGGACCATATATCAATGACAACAGCAAGAGGGACACCAGGATATGTTGCACCAGAGGTGTGTGACGGTGCTCTGGGCCCTGTTACAGATAAATCGGATGTCTATAGTTTTGGAATGCTTTTGCTAGAGGTTGTTGGGGGAAGAAAGAATATCGATCCCCTGGTGAGCAGTCCGAGTCGGTTCTATTATCCTGAATGGGCTTTCAAGATGCTTCAGAATGAGGAGCTGGGGATGACATTGGGAGGACGAAGTGCAGAAGAAATTGAAGCAGAAGATGTGGAGGAGGCGAGGAGGCTGATGACTAAAGTTGGGCTCTGGTGCATCCAGTACAAATCCACAGATCGTCCATGTATGAGCAGGGTTGTTCAAATGTTGGAAGGAAATGGAGGCAACGTGAGCAACCCTCCTTTTCCTCTCAATTGCTTCTTGGCTGCATCTAG

Fln Alignment:

AllPine_b_c44934___EDHISMTTARGTPGYVAPEVCDGALGPVTDKSDVYSFGMLLLEVVGGRKNIDPLVSSPSRFYYPEWAFKMLQNEELGMTLGGRSXXXXXXXXXXXXRRLMTKVGLWCIQYKSTDRPCMSRVVQMLEGN
A9NM60________________ESHL-VTGVRGTPGYMAPEWLLGA--GITSKSDVFSYGMVLLEIISGRRNVDNTRDS-DNWYFPSIAINKARQDKMEEIIETGLEMKRPEDLEEAYR--LIKTALWCVQSNSGLRPSMGTVVRILEGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain