SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene199584

Length: 536 nt

UniGene Fasta

>sp_v3.0_unigene199584
AGGGACAGCTGTCATGTACATTGAATCTTTCGCTAAAAGTGATTCAAGAGGATTTCATGGTTCTATAATGTTGCACAATGGATTAGTGACATTGGTCCTCATTATCCTCTTGATTGGCCTAATCTTTTGATCATTCTTCTGTGCTTCCACAGTTATTTGGTAGCAACAAACCAGACTACCTATGAGATTATCAGAAAGAGACGTATTCCTTATCTAAGGAATATACCTGACAGAGTTCATCCATTCAGCAAAGGCTTGGTTAGAAATATTTATTCATTTTGTTGCTTGTGCAATGATTATCATGTAATCCATAATTTACCTCCAGTTGAGGAATTAGAGGCCAAAGCTAGGCCTTACACACTTCGAGATATATTGACTTGTCGTTGTTGCTAGTCTGAGGCTGAGGTGATATTTCACTTGGTTCAAAACTGCCGATTTTCTTTTCACCCAATGCACCTTGATTTGTGTTGTCTTTAGGATTTTTGGGAGTCAAACTATACCCATGTAATTATATATCTCCGAGCATAATTTATGTT

Ace file of the UniGene sp_v3.0_unigene199584

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SAK9_RICCO	-	-	6.0e-28	62%
FL-Next	sp=Probable S-acyltransferase At3g51390; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%

Source	Gene names
Sma3	At3g51390; F26O13.30; GSVIVT00011882001; H0211B05.5; LOC_Os12g29560; OSJNBa0084K11.19; Os04g0562000; Os12g0480000; OsI_16981; OsI_38321; OsJ_15777; OsJ_36085; PHYPADRAFT_130130; PHYPADRAFT_140315; PHYPADRAFT_183177; POPTRDRAFT_1111401; POPTRDRAFT_585672;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51390.1	DHHC-type zinc finger family protein chr3:19075718-19077966 FORWARD LENGTH=340	9.0e-31	57%
RefSeq	Arabidopsis thaliana	NP_566950.1	putative S-acyltransferase [Arabidopsis thaliana]	1.0e-30	57%
RefSeq	Populus trichocarpa	XP_002327715.1	predicted protein [Populus trichocarpa]	9.0e-34	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q7XA86

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 131 - 340

Fln protein: RDSCHVH*IFR*K*FKRISWFYNVAQWISDIGPHYPLDWPNLLIILLCFHSYLVATNQTTYEIIRKRRIPYLRNIPDRVHPFSKGLVRNIYSFCCLCNDYHVIHNLPPVEELEAKARPYTLRDILTCRCC*

Protein Length: 132

Fln nts: AGGGACAGCTGTCATGTACATTGAATCTTTCGCTAAAAGTGATTCAAGAGGATTTCATGGTTCTATAATGTTGCACAATGGATTAGTGACATTGGTCCTCATTATCCTCTTGATTGGCCTAATCTTTTGATCATTCTTCTGTGCTTCCACAGTTATTTGGTAGCAACAAACCAGACTACCTATGAGATTATCAGAAAGAGACGTATTCCTTATCTAAGGAATATACCTGACAGAGTTCATCCATTCAGCAAAGGCTTGGTTAGAAATATTTATTCATTTTGTTGCTTGTGCAATGATTATCATGTAATCCATAATTTACCTCCAGTTGAGGAATTAGAGGCCAAAGCTAGGCCTTACACACTTCGAGATATATTGACTTGTCGTTGTTGCTAG___TCTGAGGCTGAGGTGATATTTCACTTGGTTCAAAACTGCCGATTTTCTTTTCACCCAATGCACCTTGATTTGTGTTGTCTTTAGGATTTTTGGGAGTCAAACTATACCCATGTAATTATATATCTCCGAGCATAATTTATGTT

Fln Alignment:

AllPine_b_c42125___LIILLCFHSYLVATNQTTYEIIRKRRIPYLRNIPDRVHPFSKGLVRNIYSFCCLCNDYHVIHNLPPVEELEAKARPYTLRDILTCRCC
Q7XA86________________VLLLLIFHSYLILTNQSTYELVRRRRIPYMRNIPGRVHPFSRGIRRNLYNVC--CGNYN-LDSLPTAFELEDRSRPYTCIDMLKCRCC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain