SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene198892

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene198892
TATTCAGGACCTTAGGGACTCCAAATGAGAAGATATGGCCTGATTTTGTTACTTTGACAGGAGTAAAGTGCAACTTTGTGAAACAACCGTACAATAAACTCCGTGAAAAGTTTCCGGCGGTCTGCTTTTCTGCGAGGCCAACTTTATCGGAGGCTGGATTTGACCTCATTAATCATCTTCTTACCTATGATCCTGACAAGC

Ace file of the UniGene sp_v3.0_unigene198892

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase [Arabidopsis thaliana]	-	-	4.0e-19	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Cdk10/11, putative	-	-	2.096e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	6.766e-11	-

Source	Gene names
Sma3	At1g67580/F12B7.13; At5g63370; At5g63370/K9H21.7; CDKG-1; CDKG-2; GSVIVT00017899001; GSVIVT00035090001; MICPUN_85942; NtPITSLRE alpha; OSTLU_13763; OsI_007814; OsI_015854; OsJ_07417; OsJ_15265; PHYPADRAFT_21272; PHYPADRAFT_231029; POPTRDRAFT_1085568; POPT

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Remorin, C-terminal	IPR005516	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67580.1	Protein kinase superfamily protein chr1:25327727-25330965 REVERSE LENGTH=752	1.0e-24	66%
RefSeq	Arabidopsis thaliana	NP_001154456.1	protein kinase-like protein [Arabidopsis thaliana]	2.0e-24	66%
RefSeq	Populus trichocarpa	XP_002318117.1	predicted protein [Populus trichocarpa]	1.0e-25	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSZ5

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 66 - 875

Fln protein: FRTLGTPNEKIWPDFVTLTGVKCNFVKQPYNKLREKFPAVCFSARPTLSEAGFDLINHLLTYDPDK

Protein Length: 67

Fln nts: TATTCAGGACCTTAGGGACTCCAAATGAGAAGATATGGCCTGATTTTGTTACTTTGACAGGAGTAAAGTGCAACTTTGTGAAACAACCGTACAATAAACTCCGTGAAAAGTTTCCGGCGGTCTGCTTTTCTGCGAGGCCAACTTTATCGGAGGCTGGATTTGACCTCATTAATCATCTTCTTACCTATGATCCTGACAAGC

Fln Alignment:

AllPine_b_c40928___FRTLGTPNEKIWPDFVTLTGVKCNFVKQPYNKLREKFPAVCFSARPTLSEAGFDLINHLLTYDPDK
C0PSZ5________________FRALGTPSEKIWPDFVNLQGVKCNFVKQPYNKLRDKFPPTSFSGRPTLSESGFDLLNRLLTYDPNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain