SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene198692

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene198692
AAGTATTTGTGTATCTTGCAACCAGTGGAGCTCATACAGCTGCTATTTGTGACTCAGGGGAGCTTTATACATGGGGGAGAGATGAGGGAGAAGGTAGACTGGGGCTTGGCAGCGAAGGTGGTCCTGATGAAGGAGCACTTGGCACTCCCACAAGAGTGAAGGAATTACCTGTGCCTATTGCTGCTGTCAGCTGTGGAGGA

Ace file of the UniGene sp_v3.0_unigene198692

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RCC1 domain containing protein	-	-	2.0e-06	44%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	75%

Source	Gene names
Sma3	At5g60870; GSVIVT00037528001; MtrDRAFT_AC151521g55v2; OJ1065_E04.27; OsI_32385; OsJ_13470; OsJ_30332; P0635G10.4; POPTRDRAFT_746227; RCOM_1600140; VITISV_031209;

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydroneopterin aldolase	IPR006156	-	-
Sma3	Dihydroneopterin aldolase/epimerase domain	IPR006157	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60870.1	Regulator of chromosome condensation (RCC1) family protein chr5:24485788-24487771 REVERSE LENGTH=445	2.0e-12	66%
RefSeq	Arabidopsis thaliana	NP_001078775.1	regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]	1.0e-12	66%
RefSeq	Populus trichocarpa	XP_002331537.1	predicted protein, partial [Populus trichocarpa]	4.0e-12	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1ISU3

Fln msg: Distance to subject end: 178 aas, your sequence is shorter than subject: 66 - 432

Fln protein: VFVYLATSGAHTAAICDSGELYTWGRDEGEGRLGLGSEGGPDEGALGTPTRVKELPVPIAAVSCGG

Protein Length: 67

Fln nts: AAGTATTTGTGTATCTTGCAACCAGTGGAGCTCATACAGCTGCTATTTGTGACTCAGGGGAGCTTTATACATGGGGGAGAGATGAGGGAGAAGGTAGACTGGGGCTTGGCAGCGAAGGTGGTCCTGATGAAGGAGCACTTGGCACTCCCACAAGAGTGAAGGAATTACCTGTGCCTATTGCTGCTGTCAGCTGTGGAGGA

Fln Alignment:

AllPine_b_c40601___YLATSGAHTAAICDSGELYTWXXXXXXXXXXXXXXXXPDE-GALGTPTRVKELPVPIAAVSCGG
I1ISU3________________HIATSGAHTAAITDSGELYTWGRDEGDGRLGLGSGGGPGEAGSLSVPSKVNALPVPVAAVACGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain