SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene198478

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene198478
CACCATGGCGGCAAACAATTGGATTAATAGTTACCTGGAAGCGATATTGGACGTTGGCCCTGTTGTTGGTGATGAAATTCGCACAGAAGATCCAAAATCTTCATTGCTGTTGTTGCGGGAGAAAGGGCACTTCAATCCCACTAAATATTTTGTTGAAGAAATCATCACAGGCTTTGATGAAACTGATATCTACGGTCATGGATAAAGTTTACAGAGAATAGGCACAAGGCTCTCTGCCTA

Ace file of the UniGene sp_v3.0_unigene198478

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sucrose phosphate synthase protein 1 n=2 Tax=Rosaceae RepID=B2BMQ3_PRUPE	-	-	1.0e-16	71%
FL-Next	sp=Probable sucrose-phosphate synthase; Solanum tuberosum (Potato).	-	-	0.0	66%
Sma3	Sucrose-phosphate synthase	-	-	3.892e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sucrose-phosphate synthase.	EC:2.4.1.14	-	4.131e-40	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		4.131e-40	%
Sma3	Metabolic pathways	01100		4.131e-40	%

Source	Gene names
Sma3	At5g20280; GSVIVT00006423001; GSVIVT00032685001; GSVIVT00038825001; KSPS-2; OJ1572_F02.13; Os02g0184400; OsI_06131; OsJ_05652; POPTRDRAFT_578888; POPTRDRAFT_745684; POPTRDRAFT_779065; POPTRDRAFT_783315; PpSPS1; RCOM_0271410; RCOM_0923320; SPS; SPS1; SPS2;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sucrose-phosphate synthase activity	GO:0046524	Molecular Function	-
Sma3	sucrose metabolic process	GO:0005985	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G11110.1	SPS1, ATSPS2F, KNS2, SPS2F sucrose phosphate synthase 2F chr5:3536426-3540901 FORWARD LENGTH=1047	2.0e-18	61%
RefSeq	Arabidopsis thaliana	NP_196672.3	sucrose phosphate synthase 2F [Arabidopsis thaliana]	3.0e-18	61%
RefSeq	Populus trichocarpa	XP_002324621.1	predicted protein [Populus trichocarpa]	2.0e-20	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q43845

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 981 aas, your sequence is shorter than subject: 67 - 1053

Fln protein: MAANNWINSYLEAILDVGPVVGDEIRTEDPKSSLLLLREKGHFNPTKYFVEEIITGFDETDIYGHG*

Protein Length: 68

Fln nts: CACC_-_ATGGCGGCAAACAATTGGATTAATAGTTACCTGGAAGCGATATTGGACGTTGGCCCTGTTGTTGGTGATGAAATTCGCACAGAAGATCCAAAATCTTCATTGCTGTTGTTGCGGGAGAAAGGGCACTTCAATCCCACTAAATATTTTGTTGAAGAAATCATCACAGGCTTTGATGAAACTGATATCTACGGTCATGGATAAAGTTTACAGAGAATAGGCACAAGGCTCTCTGCCTA

Fln Alignment:

AllPine_b_c40261___MAANNWINSYLEAILDVGPVVGDEIRTEDPKSSLLLLREKGHFNPTKYFVEEIITGFDETDIY
Q43845________________MAGNDWINSYLEAILDVGPGLDD-------KKSSLLLRERGRFSPTRYFVEEVITGFDETDLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain