SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene198045

Length: 286 nt

UniGene Fasta

>sp_v3.0_unigene198045
ATTGCAGCAGTATTAAGTTATTACCGTTGTTGGCAATCTACCCATTTATAGGCATGCTATCAGATGTTCTACTGTGGCTAGCCATCACCTCTGCATCCTTTTTAAAGAATATATTAGCAGTGACAATTTGCACAGGAACTTTTATTCTGCTAAATAATTCTGTGCCTCAAGATCAGAGAGGAGCTGCAAATGGACTTTCCCTGACTGGAATGTCATTTTTCAAAACATTAGGCCCAACAGGAGGTGGTTCACTGAAAAGCTTGTTGATTTGCTCAAGGGCTATGGA

Ace file of the UniGene sp_v3.0_unigene198045

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carbohydrate transporter/ sugar porter/ transporter n=1 Tax=Zea mays RepID=B4FA49_MAIZE	-	-	6.0e-19	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Chromosome undetermined scaffold_71, whole genome shotgun sequence	-	-	1.925e-12	-

Source	Gene names
Sma3	At3g43790; GSVIVT00023334001; GSVIVT00033966001; GSVIVT00033971001; GSVIVT00033972001; GSVIVT00033973001; GSVIVT00033975001; LOC_Os11g04020; LOC_Os11g04104; Os11g0134900; Os11g0135900; Os12g0133100; OsI_34993; OsI_34998; OsI_37385; OsJ_32857; OsJ_32870; O

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	tetracycline:hydrogen antiporter activity	GO:0015520	Molecular Function	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	tetracycline transport	GO:0015904	Biological Process	-
Sma3	response to antibiotic	GO:0046677	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetracycline resistance protein, TetA/multidrug resistance protein MdtG	IPR001958	-	0.0	-
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G43790.3	ZIFL2 zinc induced facilitator-like 2 chr3:15655443-15658848 FORWARD LENGTH=484	2.0e-26	56%
RefSeq	Arabidopsis thaliana	NP_189965.2	zinc induced facilitator-like 2 protein [Arabidopsis thaliana]	3.0e-26	56%
RefSeq	Populus trichocarpa	XP_002307932.1	predicted protein [Populus trichocarpa]	3.0e-24	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP10

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 94 - 512

Fln protein: CSSIKLLPLLAIYPFIGMLSDVLLWLAITSASFLKNILAVTICTGTFILLNNSVPQDQRGAANGLSLTGMSFFKTLGPTGGGSLKSLLICSRAM

Protein Length: 95

Fln nts: ATTGCAGCAGTATTAAGTTATTACCGTTGTTGGCAATCTACCCATTTATAGGCATGCTATCAGATGTTCTACTGTGGCTAGCCATCACCTCTGCATCCTTTTTAAAGAATATATTAGCAGTGACAATTTGCACAGGAACTTTTATTCTGCTAAATAATTCTGTGCCTCAAGATCAGAGAGGAGCTGCAAATGGACTTTCCCTGACTGGAATGTCATTTTTCAAAACATTAGGCCCAACAGGAGGTGGTTCACTGAAAAGCTTGTTGATTTGCTCAAGGGCTATGGA

Fln Alignment:

AllPine_b_c39617___SSIKLLPLLAIYPFIGMLSDVLLWLAITSASFLKNILAVTICTGTFILLNNSVPQDQRGAANGLSLTGMSFFKTLGPTGGGSL
B8LP10________________AAVLSIPVLACYPFISMLSGGFLWLVINCASLLKNVLTVTVYTGTFLLLNNSASQDQRGAANGLAMTGMSLFKTFGPAGGGSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain