SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197621

Length: 276 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene197621
ATCTCTATAAGAGATGTGGAAGACTGGATGATCAAATAGCCCTGCTGAAACACAAGTTGAATCTCATTCATCAAGGCATGGCATTCAATGGCAAAAGGACGAAAACTGCTAGATCTCAGGGGAAGAAGTTTCAGGTGTCAATTGAACAGGAGGCCACCCGCTTGCTGGGTAACTTGGGCTGGGCTTACATGCAGCAGAATAACTATATTGCTGCAGAGGTTGTTTATAGAAAGGCTTTGTCCATTGAACCGGACAACAACAAAATGTGTAATCTCG

Ace file of the UniGene sp_v3.0_unigene197621 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] emb\|CAB62650.1\| MS5-like protein [Arabidopsis thaliana] gb\|AAP21246.1\| At3g51280 [Arabidopsis thaliana] dbj\|BAE99956.1\| MS5 like protein [Arabidopsis thaliana] gb\|AEE78773.1\| tetrat	-	-	1.0e-37	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Pollenless3	-	-	8.136e-12	-

Source	Gene names
Sma3	178; At1g04770; At3g51280; At5g48850; At5g48850/K24G6_19; F13M7.24; F24M12.320; GSVIVT00001269001; GSVIVT00001273001; GSVIVT00001275001; GSVIVT00002435001; GSVIVT00029794001; GSVIVT00036748001; GSVIVT00036751001; LOC_Os03g06970; MA4_106O17.34; MS5; OJ1123

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51280.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:19037229-19038781 FORWARD LENGTH=430	82%
RefSeq	Arabidopsis thaliana	NP_190696.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002303408.1	predicted protein, partial [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P294

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 91 - 248

Fln protein: LYKRCGRLDDQIALLKHKLNLIHQGMAFNGKRTKTARSQGKKFQVSIEQEATRLLGNLGWAYMQQNNYIAAEVVYRKALSIEPDNNKMCNL

Protein Length: 92

Fln nts: ATCTCTATAAGAGATGTGGAAGACTGGATGATCAAATAGCCCTGCTGAAACACAAGTTGAATCTCATTCATCAAGGCATGGCATTCAATGGCAAAAGGACGAAAACTGCTAGATCTCAGGGGAAGAAGTTTCAGGTGTCAATTGAACAGGAGGCCACCCGCTTGCTGGGTAACTTGGGCTGGGCTTACATGCAGCAGAATAACTATATTGCTGCAGAGGTTGTTTATAGAAAGGCTTTGTCCATTGAACCGGACAACAACAAAATGTGTAATCTCG

Fln Alignment:

AllPine_b_c38879___LYKRCGRLDDQIALLKHKLNLIHQGMAFNGKRTKTARSQGKKFQVSIEQEATRLLGNLGWAYMQQNNYIAAEVVYRKALSIEPDNNKMCNL
A9P294________________LLKKCGRFDEQISLLKHKLRLIQEGAAFNGKSTKTARSHGRKFQVSIKKETTRLLGNLGLAFMQQHDYCYAEIVYRKAQVLEPDDNKVCNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain