SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197619

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene197619
CGAGATATATTTTTTAGCTTATACATCATTCTGGCTAACATTGTGCCTTGGCATAGTTGTTCCATATCGCTTGTATGAGAAATTCAGAGAGTTGGAATATTTGCTTTTCGCAATGGTTTCAGTGCTTCCCTCTTTCTTGATGCCATTCATTTTGGTTGGGAAGGGAGATGTAAGCAAGCATTGGTATGATCGCTA

Ace file of the UniGene sp_v3.0_unigene197619

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cycloeucalenol cycloisomerase n=1 Tax=Arabidopsis thaliana RepID=F4K8Y4_ARATH	-	-	1.0e-18	67%
FL-Next	sp=Cycloeucalenol cycloisomerase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Cyclopropyl isomerase	-	-	4.494e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cycloeucalenol cycloisomerase.	EC:5.5.1.9	-	1.348e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Steroid biosynthesis	00100	1.348e-09	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.348e-09	%
Sma3	Biosynthesis of plant hormones	01070	1.348e-09	%
Sma3	Metabolic pathways	01100	1.348e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	1.348e-09	%

Source	Gene names
Sma3	At5g50375; CPI1; CYC1; GSVIVT00017916001; LOC_Os11g19700; MXI22.9; OsI_35887; OsJ_33714; POPTRDRAFT_252617; RCOM_1506630;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-
Sma3	cycloeucalenol cycloisomerase activity	GO:0047793	Molecular Function	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	pinocytosis	GO:0006907	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	sterol biosynthetic process	GO:0016126	Biological Process	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G50375.2	CPI1 cyclopropyl isomerase chr5:20511856-20514081 FORWARD LENGTH=284	3.0e-25	67%
RefSeq	Arabidopsis thaliana	NP_568727.1	cycloeucalenol cycloisomerase [Arabidopsis thaliana]	4.0e-25	67%
RefSeq	Populus trichocarpa	XP_002321689.1	predicted protein, partial [Populus trichocarpa]	8.0e-23	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M643

Fln msg: Distance to subject end: 195 aas, your sequence is shorter than subject: 64 - 280

Fln protein: EIYFLAYTSFWLTLCLGIVVPYRLYEKFRELEYLLFAMVSVLPSFLMPFILVGKGDVSKHWYDR

Protein Length: 65

Fln nts: CGAGATATATTTTTTAGCTTATACATCATTCTGGCTAACATTGTGCCTTGGCATAGTTGTTCCATATCGCTTGTATGAGAAATTCAGAGAGTTGGAATATTTGCTTTTCGCAATGGTTTCAGTGCTTCCCTCTTTCTTGATGCCATTCATTTTGGTTGGGAAGGGAGATGTAAGCAAGCATTGGTATGATCGCTA

Fln Alignment:

AllPine_b_c38876___EIYFLAYTSFWLTLCLGIVVPYRLYEKFRELEYLLFAMVSVLPSFLMPFILVGKGDVSKHWYDR
Q9M643________________ELFFLFYTPFWLTLCLGIVVPYKLYETFTELEYLLLALVSAVPAFVIPMLLVGKADRSLCWKDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain