SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197361

Length: 498 nt

UniGene Fasta

>sp_v3.0_unigene197361
CTAGAGTTTGGCTTGTCAATTAGAAGGTATAATTGGCAATATAGACTTCTGCTCGTCCACATGTACACATATTGGGTTGCCACTGCCTCGACATTTGAATGGTACAGAAGTTTGGAAATCAAGAACATAATGCAAGGGTCAATGTCCCATCATATTTTTCCCCAGTTCTTGTCATCGCCTCTTTGGTCTGAATTAAACAGTATGATGAAAGAATACCTAAAGTTCCATGAAGATTACATGAAAGAAGCAACAAATCTTACATTTCTGGCTTATCATCATTGTAATTACTCCAAAGTGGTGGAGTTTGTGAAATTCATGGAACCCACTAGGTTTTGGATGCATAGATTCAGCGTCACAAACCACTGTTGGAACATTCCATTTCCAATCACTTCAACAACGCTGCTTAAACAGTTGTTCATGGGTCGGCTTAAACCATGTCGGGTAGTGTTCACCGTGTTAGGGACGAACTGACAACCAAATACAGTTAGGCTACATTCA

Ace file of the UniGene sp_v3.0_unigene197361

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gb\|AED97054.1\| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	2.0e-28	51%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	57%

Source	Gene names
Sma3	At5g58450; B1036C05.8; GSVIVT00024007001; Os05g0345400; OsI_19540; OsJ_18149; POPTRDRAFT_571859; RCOM_1402440;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58450.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:23626826-23632071 FORWARD LENGTH=1065	9.0e-34	51%
RefSeq	Arabidopsis thaliana	NP_200653.2	tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-33	51%
RefSeq	Populus trichocarpa	XP_002319956.1	predicted protein [Populus trichocarpa]	3.0e-40	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9I6L1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 351 aas, your sequence is shorter than subject: 157 - 1041

Fln protein: LEFGLSIRRYNWQYRLLLVHMYTYWVATASTFEWYRSLEIKNIMQGSMSHHIFPQFLSSPLWSELNSMMKEYLKFHEDYMKEATNLTFLAYHHCNYSKVVEFVKFMEPTRFWMHRFSVTNHCWNIPFPITSTTLLKQLFMGRLKPCRVVFTVLGTN*

Protein Length: 158

Fln nts: CTAGAGTTTGGCTTGTCAATTAGAAGGTATAATTGGCAATATAGACTTCTGCTCGTCCACATGTACACATATTGGGTTGCCACTGCCTCGACATTTGAATGGTACAGAAGTTTGGAAATCAAGAACATAATGCAAGGGTCAATGTCCCATCATATTTTTCCCCAGTTCTTGTCATCGCCTCTTTGGTCTGAATTAAACAGTATGATGAAAGAATACCTAAAGTTCCATGAAGATTACATGAAAGAAGCAACAAATCTTACATTTCTGGCTTATCATCATTGTAATTACTCCAAAGTGGTGGAGTTTGTGAAATTCATGGAACCCACTAGGTTTTGGATGCATAGATTCAGCGTCACAAACCACTGTTGGAACATTCCATTTCCAATCACTTCAACAACGCTGCTTAAACAGTTGTTCATGGGTCGGCTTAAACCATGTCGGGTAGTGTTCACCGTGTTAGGGACGAACTGACAACCAAATACAGTTAGGCTACATTCA

Fln Alignment:

AllPine_b_c38444___LEFGLSIRRYNWQYRLLLVHMYTYWVATASTFEWYRSLEIKNIMQGSMSHHIFPQFLSSPLWSELNSMMKEYLKFHEDYMKEATNLTFLAYHHCNYSKVVEFVKFME
B9I6L1________________LEFGLTIRRYIWQYKILLLHLYSHLGAISLAYEWYKSLDVKNILMETVSHHILPQMLVSPLWGDLNNLLKDYLRFMDDHFRESADLTFLAYRHRNYSKVIEFVQFKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain