SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene197291

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene197291
CAAAGACAATTGTATACATACAAAATCGAAGTCCCCATAGGTCACTAGATAACTTAACTCCTGAAGAAGTATTCACTGGGAAGAAACCAAGCGTAGATCGTGTTTGAATTTTTGGTAGTCCTGTTTATATTCATATACCGAAGGACAAGAGAAAGAAGTTAGATCCATCAGGGACGAAGGGAACATTTGTTGGCTACAGTGATTCCTCAAAAGCATATAA

Ace file of the UniGene sp_v3.0_unigene197291

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH	-	-	7.0e-15	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 72 - 407

Fln protein: KTIVYIQNRSPHRSLDNLTPEEVFTGKKPSVDRV*IFGSPVYIHIPKDKRKKLDPSGTKGTFVGYSDSSKAY

Protein Length: 73

Fln nts: CAAAGACAATTGTATACATACAAAATCGAAGTCCCCATAGGTCACTAGATAACTTAACTCCTGAAGAAGTATTCACTGGGAAGAAACCAAGCGTAGATCGTGTTTGAATTTTTGGTAGTCCTGTTTATATTCATATACCGAAGGACAAGAGAAAGAAGTTAGATCCATCAGGGACGAAGGGAACATTTGTTGGCTACAGTGATTCCTCAAAAGCATATAA

Fln Alignment:

AllPine_b_c38312___TIVYIQNRSPHRSLDNLTPEEVFTGKKPSVDRV*IFGSPVYIHIPKDKRKKLDPSGTKGTFVGYSDSSKAY
B8LKX7________________TATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain