SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene195794

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene195794
CCATACTCTTTAATTACAACAGCAGTTTCAGCTGATTTAGGTACCCATAGCTCACTGAATGGAAACTCACGGGCTTTAGCAACTGTCACTGCAATAATTGATGGCACTGGGTCTGTTGGAGCAGCTTTGGGGCCACTGTTGACTGGTTACATTTCAGCAAGGGGATGGAGTGGTGTCTTTATCATGCTTATCATTGCAATATTATTTGCT

Ace file of the UniGene sp_v3.0_unigene195794

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative glycerol 3-phosphate permease [Zea mays]	-	-	9.0e-26	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Putative glycerol 3-phosphate permease	-	-	4.145e-13	-

Source	Gene names
Sma3	27.t00048; 40.t00025; AT4g17550; AT4g25220; At1g30560; At2g13100; At3g47420; At4g25220; CHLREDRAFT_144519; F24A6.60; GLPT1; GSVIVT00005645001; GSVIVT00011415001; GSVIVT00029922001; MICPUCDRAFT_45641; MICPUN_103699; OSJNBa0035I03.23; OSJNBb0012E24.2; OSJNB

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase	IPR000477	-	0.0	-
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G13100.1	Major facilitator superfamily protein chr2:5390206-5391764 FORWARD LENGTH=493	3.0e-31	78%
RefSeq	Arabidopsis thaliana	NP_001154514.1	putative glycerol-3-phosphate transporter 5 [Arabidopsis thaliana]	9.0e-32	78%
RefSeq	Populus trichocarpa	XP_002329925.1	predicted protein [Populus trichocarpa]	8.0e-34	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABP1

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 70 - 134

Fln protein: PYSLITTAVSADLGTHSSLNGNSRALATVTAIIDGTGSVGAALGPLLTGYISARGWSGVFIMLIIAILFA

Protein Length: 71

Fln nts: CCATACTCTTTAATTACAACAGCAGTTTCAGCTGATTTAGGTACCCATAGCTCACTGAATGGAAACTCACGGGCTTTAGCAACTGTCACTGCAATAATTGATGGCACTGGGTCTGTTGGAGCAGCTTTGGGGCCACTGTTGACTGGTTACATTTCAGCAAGGGGATGGAGTGGTGTCTTTATCATGCTTATCATTGCAATATTATTTGCT

Fln Alignment:

AllPine_b_c35623___PYSLITTAVSADLGTHSSLNGNSRALATVTAIIDGTGSVGAALGPLLTGYISARGWSGVFIMLIIAILFA
D5ABP1________________PYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAALGPLLTGFISAQGWNGVFSMLMLAAFIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain