SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene195787

Length: 282 nt

UniGene Fasta

>sp_v3.0_unigene195787
GGCCTCTGCAACTCCCACACGCAAAACCACCTTTTGTGTGACCGGAGCAACAGGGTTCGTGGCCTCCTCGCTGGTCAAGCTCTTACTCCAACAGGGTCACACTGTCCACGCTACTGTGCGTGACCCAGGGAACGTAGTGAAGGTACGGCATCTCCTGGATATTCCGGGCGCTGGGGAGAGGCTCAAAATCTTTAGTGCGGATCTACTGGAAGAAGGCAGTTTCGATGATGCCATAGACCGTTGTGATGGCGTTTTCCATGTGGCCAGTCCCGTCAACTTCAA

Ace file of the UniGene sp_v3.0_unigene195787

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	anthocyanidin reductase [Ginkgo biloba]	-	-	3.0e-25	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Dihydroflavonol 4-reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	1.491e-37	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	1.491e-37	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.491e-37	%
Sma3	Metabolic pathways	01100	1.491e-37	%
Sma3	Biosynthesis of secondary metabolites	01110	1.491e-37	%

Source	Gene names
Sma3	A; A1; A1 (Teosinte); A1* (second gene); A1* (second gene)/ (Teosinte); A1-a; A1-b; ADH; AN6; ANR; ANT18; AeloDFR-S1; AeseDFR-S1; AeshDFR-S1; AespDFR-S2; AespDFR-S3; AespDFR-S4; AespDFR-S5; AesqDFR-D1; At1g09490; At1g09500; At1g51410; At5g42800; CAD; CAD1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-
Sma3	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G42800.1	DFR, TT3, M318 dihydroflavonol 4-reductase chr5:17164296-17165864 REVERSE LENGTH=382	2.0e-31	61%
RefSeq	Arabidopsis thaliana	NP_199094.1	dihydroflavonol-4-reductase [Arabidopsis thaliana]	2.0e-31	61%
RefSeq	Populus trichocarpa	XP_002314863.1	predicted protein [Populus trichocarpa]	5.0e-31	69%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADN9

Fln msg: Distance to subject end: 244 aas, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 93 - 343

Fln protein: ASATPTRKTTFCVTGATGFVASSLVKLLLQQGHTVHATVRDPGNVVKVRHLLDIPGAGERLKIFSADLLEEGSFDDAIDRCDGVFHVASPVNF

Protein Length: 94

Fln nts: GGCCTCTGCAACTCCCACACGCAAAACCACCTTTTGTGTGACCGGAGCAACAGGGTTCGTGGCCTCCTCGCTGGTCAAGCTCTTACTCCAACAGGGTCACACTGTCCACGCTACTGTGCGTGACCCAGGGAACGTAGTGAAGGTACGGCATCTCCTGGATATTCCGGGCGCTGGGGAGAGGCTCAAAATCTTTAGTGCGGATCTACTGGAAGAAGGCAGTTTCGATGATGCCATAGACCGTTGTGATGGCGTTTTCCATGTGGCCAGTCCCGTCAACTTCAA

Fln Alignment:

AllPine_b_c35615___TTFCVTGATGFVASSLVKLLLQQGHTVHATVRDPGNVVKVRHLLDIPGAGERLKIFSADLLEEGSFDDAIDRCDGVFHVASPVNF
D5ADN9________________TTVCVTGATGFVASWLVKRLLEKGYTVHATVRDPENKMKVRHLLDIPKAGEKLKLFRADLIEEGSFDAAINGCDGVFHVASPVDF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain