SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene195768

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene195768
AAGTTGGCATTGTGCATACTCTTCAGTTTTGAAAGATATCTAAGATGGGCATGTCAAATTTGATGATCGTTTACATTTATATGTTGCCAGACATAGAAGGAAAGCATATTTCCATGACAGAAGATCACAGGCTTACTAGTCTGTCTGAAAAGAACCGAATGTTGGAAATAGGCAAGCAGCTAAGAGATGGGGAAACTCGCTTATGTGGAATGAACATAGCTCGTGTTCTTGGAGATAAATTTC

Ace file of the UniGene sp_v3.0_unigene195768

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinase-associated protein phosphatase 1 [Solanum peruvianum]	-	-	1.0e-11	62%
FL-Next	sp=Protein phosphatase 2C 70; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%

Source	Gene names
Sma3	At5g19280; F7K24.30; GSVIVT00019935001; KAPP; KAPP1; PHYPADRAFT_134209; PHYPADRAFT_139979; POPTRDRAFT_720715; POPTRDRAFT_805045; T24G5.3;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein kinase binding	GO:0019901	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Kinase associated protein phosphatase	IPR016660	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G19280.2	-	1.0e-15	64%
RefSeq	Arabidopsis thaliana	NP_001154720.1	protein phosphatase 2C 70 [Arabidopsis thaliana]	1.0e-15	64%
RefSeq	Populus trichocarpa	XP_002315790.1	predicted protein [Populus trichocarpa]	2.0e-15	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P46014

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 94 aas, your sequence is shorter than subject: 80 - 581

Fln protein: VGIVHTLQF*KISKMGMSNLMIVYIYMLPDIEGKHISMTEDHRLTSLSEKNRMLEIGKQLRDGETRLCGMNIARVLGDKF

Protein Length: 81

Fln nts: AAGTTGGCATTGTGCATACTCTTCAGTTTTGAAAGATATCTAAGATGGGCATGTCAAATTTGATGATCGTTTACATTTATATGTTGCCAGACATAGAAGGAAAGCATATTTCCATGACAGAAGATCACAGGCTTACTAGTCTGTCTGAAAAGAACCGAATGTTGGAAATAGGCAAGCAGCTAAGAGATGGGGAAACTCGCTTATGTGGAATGAACATAGCTCGTGTTCTTGGAGATAAATTTC

Fln Alignment:

AllPine_b_c35576___GKHISMTEDHRLTSLSEKNRMLEIGKQLRDGETRLCGMNIARVLGDKF
P46014________________GRYIQMTEDHRVVSLSERKRFQEAGLALRDGETRLFGINLARMLGDKF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain