SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192822

Length: 419 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene192822
GTTTGGATCCCAAGACCGGCGACTTCCCCAGCAAGACTGACGTCAAGGCTCAGACGGAGCAGGCGCTGAAGAACATCGCCGCCATTCTCAAGGCATCCAACAGTTCGTTCGATCAGGTTGTGAAAACCACGGTCCTGCTGGCGTCCATCGATGATTATCCGGTTGTGAACGAAATCTATGCCAAGTATTTCAGTGGCGCCGCACCTCCCGCTCGTGCGGCTTTCGCGGTGAAGACGTTGCCCCGCAATGCCCTTGTTGAAATCGAGTGCATTGCCCTGGCTCAGTAAGCCCACAATTGCCAGCTCAGTAAGCGCAAGTGCGTTGTGTGGGTACATGTGCATCGAACGTATTCAAGGGGACACAAGAAGGCCGTTACATATTTGATATCTCGATTATGCAATAAAAGCGGAATGGACAGT

Ace file of the UniGene sp_v3.0_unigene192822 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	YjgF-like protein n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3MC40_ANAVT	-	-	2.0e-16	50%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	57%

Source	Gene names
Sma3	At3g20390; CHLREDRAFT_121371; CHRD; GSVIVT00027326001; GtTIP; MICPUCDRAFT_43856; MICPUN_78501; Os07g0516200; OsI_26193; OsJ_24449; P0048D08.132; P0650C03.11; PHYPADRAFT_121716; POPTRDRAFT_569140; POPTRDRAFT_829920; RCOM_0082210; VITISV_026634;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	YjgF-like protein	IPR006056	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20390.1	endoribonuclease L-PSP family protein chr3:7110227-7111695 REVERSE LENGTH=187	4.0e-20	54%
RefSeq	Arabidopsis thaliana	NP_188674.1	endoribonuclease L-PSP family protein [Arabidopsis thaliana]	5.0e-20	54%
RefSeq	Populus trichocarpa	XP_002317599.1	predicted protein [Populus trichocarpa]	8.0e-19	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: I1GTZ4

Fln msg: your sequence is shorter than subject: 95 - 177

Fln protein: LDPKTGDFPSKTDVKAQTEQALKNIAAILKASNSSFDQVVKTTVLLASIDDYPVVNEIYAKYFSGAAPPARAAFAVKTLPRNALVEIECIALAQ*

Protein Length: 96

Fln nts: GTTTGGATCCCAAGACCGGCGACTTCCCCAGCAAGACTGACGTCAAGGCTCAGACGGAGCAGGCGCTGAAGAACATCGCCGCCATTCTCAAGGCATCCAACAGTTCGTTCGATCAGGTTGTGAAAACCACGGTCCTGCTGGCGTCCATCGATGATTATCCGGTTGTGAACGAAATCTATGCCAAGTATTTCAGTGGCGCCGCACCTCCCGCTCGTGCGGCTTTCGCGGTGAAGACGTTGCCCCGCAATGCCCTTGTTGAAATCGAGTGCATTGCCCTGGCTCAGTAA___GCCCACAATTGCCAGCTCAGTAAGCGCAAGTGCGTTGTGTGGGTACATGTGCATCGAACGTATTCAAGGGGACACAAGAAGGCCGTTACATATTTGATATCTCGATTATGCAATAAAAGCGGAATGGACAGT

Fln Alignment:

AllPine_b_c30991___LDPKTGDFPSKTDVKAQTEQALKNIAAILKASNSSFDQVVKTTVLLASIDDYPVVNEIYAKYFSGXXXXXXXXXAVKTLPRNALVEIECIA
I1GTZ4________________LNPETGKFVSET-VEEQTEQVMKNMGEILKASGASYSSVVKTTIMLADLQDFKKVNEIYAKYFPA-PAPARSTYQVAALPLNARVEIECIA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain