SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene192016

Length: 554 nt

UniGene Fasta

>sp_v3.0_unigene192016
CCGAAGACGACCAACAACGCCGCCCTCTTCAACAACTCGGCCCAGCTGTGGAACCACTCGTTCTACTGGGACTGCATGGCCCCTGTCGGCGAGACCGGCGAGATCTCGGCTGAGCTGGAGCAGCTCATCAAGGAGTCCTTCGGCAGCGTCGCCGATTTCAAGAAGAAGTTCACCGACAGCGCTGTGGCCAACTTTGGCAGCGGCTGGACCTGGCTGGTGAACATCAACGGCAAGCTGGAGATCCAGAACACCTCCAACGCCGAGTCCCCTGTCACCCTCCGCGTGAAGCCCCTCCTCACCCTCGACGTCTGGGAGCACGCCTACTACCTCGACCACCAGAACCGCCGCCCCGAGTACATCAACAAGTGGTGGGACGTCGTCAACTGGAACTTCGTCAACAAGCAGCTGAAGCAGTAAGTTGACGACCATCGTGCCCGGCGCACCTTGGCCACGAGCTCCTTCTCCTTGCCATGTTCGCCTTCGGTCCAATGGAGTCGCGTAATGAAGAGACGAGGGTCGTGGTTTCTCGACTACATGTTGTCCTTGCGCTACCC

Ace file of the UniGene sp_v3.0_unigene192016

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Superoxide dismutase n=1 Tax=Acanthamoeba castellanii RepID=Q5IZD9_ACACA	-	-	87%
FL-Next	sp=Superoxide dismutase; Pinus pinaster (Maritime pine).	-	-	50%
Sma3	Superoxide dismutase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Superoxide dismutase.	EC:1.15.1.1	-	0.0	-

Source	Gene names
Sma3	At4g25100; CHLREDRAFT_182933; CHLREDRAFT_53941; DIMNSOD; F13M23.240; FESOD; FSD1; Fe-SOD; FeSOD; MSD1; PHATRDRAFT_12583; PHYPADRAFT_26510; SOD; SOD1; SODA; SODB; SodB2; THAPSDRAFT_32874; sod; sod1; sodb;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	superoxide dismutase activity	GO:0004784	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	superoxide metabolic process	GO:0006801	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	circadian rhythm	GO:0007623	Biological Process	-
Sma3	response to copper ion	GO:0046688	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Manganese/iron superoxide dismutase	IPR001189	-	0.0	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25100.1	FSD1, ATFSD1 Fe superoxide dismutase 1 chr4:12884649-12886501 REVERSE LENGTH=212	2.0e-37	47%
RefSeq	Arabidopsis thaliana	NP_001031710.1	Superoxide dismutase [Fe] [Arabidopsis thaliana]	2.0e-37	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q6QJL0

Fln msg: your sequence is shorter than subject: 139 - 249

Fln protein: PKTTNNAALFNNSAQLWNHSFYWDCMAPVGETGEISAELEQLIKESFGSVADFKKKFTDSAVANFGSGWTWLVNINGKLEIQNTSNAESPVTLRVKPLLTLDVWEHAYYLDHQNRRPEYINKWWDVVNWNFVNKQLKQ*

Protein Length: 140

Fln nts: CCGAAGACGACCAACAACGCCGCCCTCTTCAACAACTCGGCCCAGCTGTGGAACCACTCGTTCTACTGGGACTGCATGGCCCCTGTCGGCGAGACCGGCGAGATCTCGGCTGAGCTGGAGCAGCTCATCAAGGAGTCCTTCGGCAGCGTCGCCGATTTCAAGAAGAAGTTCACCGACAGCGCTGTGGCCAACTTTGGCAGCGGCTGGACCTGGCTGGTGAACATCAACGGCAAGCTGGAGATCCAGAACACCTCCAACGCCGAGTCCCCTGTCACCCTCCGCGTGAAGCCCCTCCTCACCCTCGACGTCTGGGAGCACGCCTACTACCTCGACCACCAGAACCGCCGCCCCGAGTACATCAACAAGTGGTGGGACGTCGTCAACTGGAACTTCGTCAACAAGCAGCTGAAGCAGTAA___GTTGACGACCATCGTGCCCGGCGCACCTTGGCCACGAGCTCCTTCTCCTTGCCATGTTCGCCTTCGGTCCAATGGAGTCGCGTAATGAAGAGACGAGGGTCGTGGTTTCTCGACTACATGTTGTCCTTGCGCTACCC

Fln Alignment:

AllPine_b_c30117___KTTNNA---ALFNNSAQLWNHSFYWDCMAPVGETGEISAELEQLIKESFGSVADFKKKFTDSAVANFGSGWTWLVNINGKLEIQNTSNAESPVTLRVKPLLTLDVWEHAYYLDHQNRRPEYINKWW-DVVNWNFVNKQL
Q6QJL0________________KTYNNGDPRPVFNNAAQAWNHEFFWECMKPGGGK-EPKGEILELIKRDFGAYDEFLKEFKQASATQFGSGWAWLVLKDNKLVIEKTPNALNPLIWGHKPLLTIDVWEHAYYLDYQNRRPDYISTFMNELVSWDAVNARL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain