SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191353

Length: 497 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene191353
ACTGGATGAACGACAGGCTCATGCCTTGAATAACTTCATGCCAACCAATGAGGACCTGGCGAATGCCGCCATCAGTCTTCAACTATCTGGTGGCCAGCCTCTTCTGGCACCAATATATCCGCGCATGCCCCTTCCTCCGGATGTGATAGATGAACCTCTTTACGTGAACGCGAAGCAGTACGCAAGAATATTAAAGCGAAGACAAGCTCGCGCAAAACTGGAGGCGGAAAATAAACTACTAAAGAATAAGAAATCTCAGCAGGCTTACCTGCACGAGTCACGACATCAACATGCTCTCCGACGAGCAAGAGGACGAGGAGGTCGGTTTCTGTCAAGTAAGGATTTAGCCGCGGAATCTGATGCCCTCGCAAAGAAAGAATCACTGGAGTCCCAAGACGAACATCCAAATGGTCTTCTTGGGGACCTTCCCGAAAAATCATCTCCCTATGAACTTAACCACAATGTAAACTAAAACTGTAACGAAATAAAATAATACC

Ace file of the UniGene sp_v3.0_unigene191353 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nuclear transcription factor Y subunit A-7 n=3 Tax=Andropogoneae RepID=B6TY54_MAIZE	-	-	1.0e-13	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Nuclear transcription factor Y subunit A-3	-	-	8.248e-17	-

Source	Gene names
Sma3	AT5G12840; At1g17590; At1g30500; At1g54160; At1g72830; At3g14020; At3g20910; At5g12840; CBF-A01; CBF-A22; CBF-B; EMB2220; F15I1.26; F26G16.12; GSVIVT00024601001; GSVIVT00025563001; GSVIVT00028796001; HAP2A; HAP2C; LOC_Os03g07880; LOC_Os03g29760; LOC_Os03g

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	CCAAT-binding factor complex	GO:0016602	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3		GO:0032582	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20910.1	NF-YA9 nuclear factor Y, subunit A9 chr3:7326495-7328369 FORWARD LENGTH=303	8.0e-14	45%
RefSeq	Arabidopsis thaliana	NP_566670.1	nuclear transcription factor Y subunit A-9 [Arabidopsis thaliana]	1.0e-13	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU26

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 68 aas, your sequence is shorter than subject: 157 - 286

Fln protein: LDERQAHALNNFMPTNEDLANAAISLQLSGGQPLLAPIYPRMPLPPDVIDEPLYVNAKQYARILKRRQARAKLEAENKLLKNKKSQQAYLHESRHQHALRRARGRGGRFLSSKDLAAESDALAKKESLESQDEHPNGLLGDLPEKSSPYELNHNVN*

Protein Length: 158

Fln nts: ACTGGATGAACGACAGGCTCATGCCTTGAATAACTTCATGCCAACCAATGAGGACCTGGCGAATGCCGCCATCAGTCTTCAACTATCTGGTGGCCAGCCTCTTCTGGCACCAATATATCCGCGCATGCCCCTTCCTCCGGATGTGATAGATGAACCTCTTTACGTGAACGCGAAGCAGTACGCAAGAATATTAAAGCGAAGACAAGCTCGCGCAAAACTGGAGGCGGAAAATAAACTACTAAAGAATAAGAAATCTCAGCAGGCTTACCTGCACGAGTCACGACATCAACATGCTCTCCGACGAGCAAGAGGACGAGGAGGTCGGTTTCTGTCAAGTAAGGATTTAGCCGCGGAATCTGATGCCCTCGCAAAGAAAGAATCACTGGAGTCCCAAGACGAACATCCAAATGGTCTTCTTGGGGACCTTCCCGAAAAATCATCTCCCTATGAACTTAACCACAATGTAAACTAAAACTGTAACGAAATAAAATAATACC

Fln Alignment:

AllPine_b_c29386___PRMPLPP-DVIDEP-LYVNAKQYARILKRRQARXXXXXXXXXXXXXKSQQAYLHESRHQHALXXXXXXXXRFLSSK-DLAAESDALAKKESLESQDEHPNGLLGDLPEKSSPYELN
A9NU26________________PGLPLPPSDMVEEPPVYVNAKQYRGILRRRQSR---AKAESENKLIKSRKPYLHESRHRHALRRARGCGGRFLNTKNDGSNEKDVSGDNDSHDSMGQSNKVLNPDSGKDGTSHEVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain