SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene191006

Length: 265 nt

UniGene Fasta

>sp_v3.0_unigene191006
CTATCCGGTCTAGCAGAGTCAGACCTGTCACATATCTCCACATGCGCTCAAGGGATAGTGGGGTATTTGGATCCTGAGTATTACAGAAATTACCAGCTCACTGATCAGGTCTAAGTTTTCTCATATTAAATAACGATCAGATATAAATTTTGAATCTGGTGAAGGGATATTGCACAGAACGCCCTACCCCAAGGGATGGCAAGCAGTTTATTGGACATTGGGTGAAGAGAATTCAAGTTTGAGGGCACATATGTTGAGGAAGTTT

Ace file of the UniGene sp_v3.0_unigene191006

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase-related protein n=1 Tax=Glycine max RepID=C6ZRT3_SOYBN	-	-	5.0e-11	67%
FL-Next	sp=Wall-associated receptor kinase-like 15; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%

Source	Gene names
Sma3	GSVIVT00000553001; GSVIVT00018412001; OSJNBb0059K16.4; Os05g0318100; OsI_19447; OsJ_18043; POPTRDRAFT_420830; POPTRDRAFT_809884; RCOM_1351700; RCOM_1481880; VITISV_022322; WAKL1;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53840.1	Protein kinase superfamily protein chr3:19945571-19947719 FORWARD LENGTH=639	2.0e-12	58%
RefSeq	Arabidopsis thaliana	NP_190952.2	wall-associated receptor kinase-like 15 [Arabidopsis thaliana]	3.0e-12	58%
RefSeq	Populus trichocarpa	XP_002311189.1	predicted protein, partial [Populus trichocarpa]	2.0e-15	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M342

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 47 aas, your sequence is shorter than subject: 38 - 639

Fln protein: LSGLAESDLSHISTCAQGIVGYLDPEYYRNYQLTDQV*

Protein Length: 39

Fln nts: CTATCCGGTCTAGCAGAGTCAGACCTGTCACATATCTCCACATGCGCTCAAGGGATAGTGGGGTATTTGGATCCTGAGTATTACAGAAATTACCAGCTCACTGATCAGGTCTAAGTTTTCTCATATTAAATAACGATCAGATATAAATTTTGAATCTGGTGAAGGGATATTGCACAGAACGCCCTACCCCAAGGGATGGCAAGCAGTTTATTGGACATTGGGTGAAGAGAATTCAAGTTTGAGGGCACATATGTTGAGGAAGTTT

Fln Alignment:

AllPine_b_c29009___LSGLAESDLSHISTCAQGIVGYLDPEYYRNYQLTDQV*VFSY*ITI
Q9M342________________LSRLGVSDVSHVTTCAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain