SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190908

Length: 267 nt

UniGene Fasta

>sp_v3.0_unigene190908
AGTGCGTGTCAAAATGAGTGGACAAGATGCTCTAACCTCCCCGCCGGCACACCAGGCGGCCATTGACGAGAGCAATTTTCATGGCGGCAGTTACCAGTTCGACGGCGCTGGAAATGAAGTTCCCGAAAACCTTCCAGAAACGCCGAAGAAGAAGACGATTACGCAGAGTACATCCCCATTAAGAAGCGAAGAATGATGGAAGCCCAAAAGATTCTACAGAGGAAGGGCAATGGTTCTCTGTTACAGACATTCGAGGTTGTGGAGGAG

Ace file of the UniGene sp_v3.0_unigene190908

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative DEAD-box protein abstrakt n=1 Tax=Trifolium pratense RepID=Q2PEY4_TRIPR	-	-	5.0e-06	77%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%

Source	Gene names
Sma3	GSVIVT00003270001; VITISV_003102;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A5B7F0

Fln msg: Distance to subject end: 545 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 50 - 587

Fln protein: SSRKPSRNAEEEDDYAEYIPIKKRRMMEAQKILQRKGNGSLLQTFEVVEE

Protein Length: 51

Fln nts: AGTGCGTGTCAAAATGAGTGGACAAGATGCTCTAACCTCCCCGCCGGCACACCAGGCGGCCATTGACGAGAGCAATTTTCATGGCGGCAGTTACCAGTTCGACGGCGCTGGAA_-_ATGAAGTTCCCGAAAACCTTCCAGAAACGCCGAAGAAGAAGACGATTACGCAGAGTACATCCCCATTAAGAAGCGAAGAATGATGGAAGCCCAAAAGATTCTACAGAGGAAGGGCAATGGTTCTCTGTTACAGACATTCGAGGTTGTGGAGGAG

Fln Alignment:

AllPine_b_c28804___EEEDDYAEYIPIKKRRMMEAQKILQRKGNGSLLQ
A5B7F0________________EEDDDYVEYIPVKKRRAMEAQRILQRKGKSSALE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain