SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190534

Length: 182 nt

UniGene Fasta

>sp_v3.0_unigene190534
AGCGTGCCAAGGCCATGGTTTTCCGTGATGGCTACATGGTCAAGTCCGGTGAGGCTACCAAGTACTATGTTGACAAGGCAGTTCGTCACATCATGCTCAAGCAGGGTGTCCTCGGTGTCAACCTGTCTATCATGCTCCCCTATGACCCCCATGGCAAGGATGGATCATCATACAAGCAGCCT

Ace file of the UniGene sp_v3.0_unigene190534

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S3 n=1 Tax=Dictyostelium fasciculatum RepID=F4Q7T4_9MYCE	-	-	1.0e-14	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	Gene names
Sma3	AT5G35530; At2g31610; At5g35530; MOK9.14; RPS3A; RPS3C; T9H9.13;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Ribosomal protein S3, eukaryotic/archaeal	IPR005703	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G31610.1	Ribosomal protein S3 family protein chr2:13450384-13451669 FORWARD LENGTH=250	2.0e-19	58%
RefSeq	Arabidopsis thaliana	NP_180719.1	40S ribosomal protein S3-1 [Arabidopsis thaliana]	3.0e-19	58%
RefSeq	Populus trichocarpa	XP_002322150.1	predicted protein [Populus trichocarpa]	4.0e-18	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTN5

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 60 - 233

Fln protein: RAKAMVFRDGYMVKSGEATKYYVDKAVRHIMLKQGVLGVNLSIMLPYDPHGKDGSSYKQP

Protein Length: 61

Fln nts: AGCGTGCCAAGGCCATGGTTTTCCGTGATGGCTACATGGTCAAGTCCGGTGAGGCTACCAAGTACTATGTTGACAAGGCAGTTCGTCACATCATGCTCAAGCAGGGTGTCCTCGGTGTCAACCTGTCTATCATGCTCCCCTATGACCCCCATGGCAAGGATGGATCATCATACAAGCAGCCT

Fln Alignment:

AllPine_b_c28290___RAKAMVFRDGYMVKSGEATKYYVDKAVRHIMLKQGVLGVNLSIMLPYDPHGKDGSSYKQP
A9NTN5________________RAKSMKFKDGYMISSGQPVNEYIDKAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain