SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189173

Length: 400 nt

UniGene Fasta

>sp_v3.0_unigene189173
ATGGAGTGCTTCATTGATCGTTGCCAAAGTTGATACTGTCTGTGCATTATATGATTCTAATCAGTCCAGCAGCAACAGGGGCATAAAATGGACAATAGTTTGCTTTAACTATATTAATCTGAATGATTTCCTGATCTTGAATATTGTGTAGAGGTGGCACTTTTTTGTTTACTTTCAAGGTGTCTCCACTTTACCCCCACGATGCACCGAAGGTGAAATGTAAGACAAAGATTTACCACCACAATATTGACTTGGAAGGCAATGTGTGCCTCAATATTCTCCGTGAAGACTGGAAGCCTGTCCTGAATATCAACACCATCATTTATGCGTTGTATCATCTCTTCACAATTTACCTCCCGAGTATTGCCTTAACCAGGAAGCTGCTGCTGTGATGAGAGAT

Ace file of the UniGene sp_v3.0_unigene189173

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=D5ABW6_PICSI	-	-	6.0e-30	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Ubiquitin carrier protein	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		0.0	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		0.0	%

Source	Gene names
Sma3	At2g18600; At4g36800; C7A10.560; CHLREDRAFT_692; E2; F24H14.5; GSVIVT00014673001; GSVIVT00024994001; LOC_Os10g11260; MICPUCDRAFT_59129; MICPUN_97701; OJ1742_G01.34; ORCE; OSTLU_12468; Os08g0374100; Os09g0321900; Os10g0190000; OsI_29037; OsI_30867; OsJ_271

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	NEDD8 ligase activity	GO:0019788	Molecular Function	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR015580	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36800.1	RCE1 RUB1 conjugating enzyme 1 chr4:17341237-17342148 REVERSE LENGTH=184	2.0e-37	85%
RefSeq	Arabidopsis thaliana	NP_001154289.1	NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana]	3.0e-37	85%
RefSeq	Populus trichocarpa	XP_002310200.1	predicted protein [Populus trichocarpa]	6.0e-39	89%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABW6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 30 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 84 - 128

Fln protein: ILCRGGTFLFTFKVSPLYPHDAPKVKCKTKIYHHNIDLEGNVCLNILREDWKPVLNINTIIYALYHLFTIYLPSIALTRKLLL*

Protein Length: 85

Fln nts: ATGGAGTGCTTCATTGATCGTTGCCAAAGTTGATACTGTCTGTGCATTATATGATTCTAATCAGTCCAGCAGCAACAGGGGCATAAAATGGACAATAGTTTGCTTTAACTATATTAATCTGAATGATTTCCTGATCTTGAATATTGTGTAGAGGTGGCACTTTTTTGTTTACTTTCAAGGTGTCTCCACTTTACCCCCACGATGCACCGAAGGTGAAATGTAAGACAAAGATTTACCACCACAATATTGACTTGGAAGGCAATGTGTGCCTCAATATTCTCCGTGAAGACTGGAAGCCTGTCCTGAATATCAACACCATCATTTATGCGTTGTATCATCTCTTCACAATTTACCTCCCGAGTATTGCCTTAACCAGGAAGCTGCTGCTGTGATGAGAGAT

Fln Alignment:

AllPine_b_c24150___RGGTFLFTFKVSPLYPHDAPKVKCKTKIYHHNIDLEGNVCLNILREDWKPVLNINTIIYALYHLFT
D5ABW6________________QGGSFLFTFQVSPIYPHDAPKVKCMTKVYHPNIDLEGNVCLNILREDWKPVLNINTIVYGLYHLFT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain