SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188838

Length: 450 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene188838
ACAGAGGAGCTTTCGCCAGAGCCTCTGGAAACTACGCCACTGTCATTGCCCACAGTGATGATGGAAACAAGACCAAGCTCAGACTCCCATCTGGATCTAAGAAGACTGTTTTGTCCACCGCCAGAGCTATGATCGGAATCGTTGGAGGAGGAGGAAGAATTGACAAGCCTCTTCTTAAGGCTGGTGTTGTCCACCACAAGTACAAGGCCAAGAGAAATTCATGGCCAAAGGTTAGAGGTGTTGCTATGAATCCTGTAGATCACCCTCACGGAGGAGGTAATCACCAACACATTGGACACCCTTCCACCGTCAGAAGAGATGCTCCTCACGGACAGAAGGTTGGTCTCATTGCCGCCAGAAGAACTGGTCGTCTGCGTGGAGGAAAGAAGGGAGGTGATCACGACGAAGAAATGGTTGCAACTGCTTAAGAATGTTCATAAAATTTGCTCC

Ace file of the UniGene sp_v3.0_unigene188838 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal subunit protein L8, putative n=4 Tax=Plasmodium RepID=B3L699_PLAKH	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Ribosomal protein L8	-	-	6.663e-09	-

Source	Gene names
Sma3	At3g51190; At4g36130; EMB2296; F23E13.20; F24M12.230; GSVIVT00026101001; GSVIVT00027466001; GSVIVT00036802001; LOC_Os12g38000; MICPUCDRAFT_49650; MICPUN_95460; OSTLU_31116; Os12g0567700; OsI_38762; OsI_38771; OsJ_36548; Ot04g01970; PHATR_28234; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L2	IPR002171	-	-
Sma3	Ribosomal protein S19/S15	IPR002222	-	-
Sma3	Ribosomal protein S19A/S15e	IPR005713	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	Ribosomal protein L2, domain 3	IPR014726	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18020.1	EMB2296 Ribosomal protein L2 family chr2:7837151-7838160 FORWARD LENGTH=258	74%
RefSeq	Arabidopsis thaliana	NP_179393.1	60S ribosomal protein L8-1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002327761.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQX8

Fln msg: your sequence is shorter than subject: 142 - 259

Fln protein: RGAFARASGNYATVIAHSDDGNKTKLRLPSGSKKTVLSTARAMIGIVGGGGRIDKPLLKAGVVHHKYKAKRNSWPKVRGVAMNPVDHPHGGGNHQHIGHPSTVRRDAPHGQKVGLIAARRTGRLRGGKKGGDHDEEMVATA*

Protein Length: 143

Fln nts: ACAGAGGAGCTTTCGCCAGAGCCTCTGGAAACTACGCCACTGTCATTGCCCACAGTGATGATGGAAACAAGACCAAGCTCAGACTCCCATCTGGATCTAAGAAGACTGTTTTGTCCACCGCCAGAGCTATGATCGGAATCGTTGGAGGAGGAGGAAGAATTGACAAGCCTCTTCTTAAGGCTGGTGTTGTCCACCACAAGTACAAGGCCAAGAGAAATTCATGGCCAAAGGTTAGAGGTGTTGCTATGAATCCTGTAGATCACCCTCACGGAGGAGGTAATCACCAACACATTGGACACCCTTCCACCGTCAGAAGAGATGCTCCTCACGGACAGAAGGTTGGTCTCATTGCCGCCAGAAGAACTGGTCGTCTGCGTGGAGGAAAGAAGGGAGGTGATCACGACGAAGAAATGGTTGCAACTGCTTAA___GAATGTTCATAAAATTTGCTCC

Fln Alignment:

AllPine_b_c22152___RGAFARASGNYATVIAHSDDGNKTKLRLPSGSKKTVLSTARAMIGIVGGGGRIDKPLLKAGVVHHKYKAKRNSWPKVRGVAMNPVDHPHGGGNHQHIGHPSTVRRDAPHGQKV
C0PQX8________________RGSFARASGDYAIVVSHNPDNGTTRVKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKV

SSRs (tot: 1)

Start position	End position	Sequence	Length
296	307	TCC TCC TCC TCC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain