SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188564

Length: 391 nt

UniGene Fasta

>sp_v3.0_unigene188564
ACACCGGTATCTCTGTGCAGGTCTCTACAGGTTCAGGAACTCCACAGCCGGAAATTCTAGACTGGAATATCACTTAACAGCAAAAAACGGTGATCTGCATAGCCAGACTGTGCTCCTGAATGGGAACATTTTGGAGATAACATCTGATGGTAAGATACCCTCTTTACCGGCGGTGACAGTTCCTGCTAATGGACCAGTAATAGTACACCCTCTCTCTATTGCATTCGTACAGCTTCCTTATGTTCGATTCACAGCGTGTAGTTGATAGGAATTGGCTGTAGATCAAAGCTACCATTTAATTGGTTATTTTAGCTGAAAATTGAGTTGACTGCTATTGTTCCAAAGAGATGTTTGATCGGCTCAATGGCCCATGAATATATTTTCAGCAAAT

Ace file of the UniGene sp_v3.0_unigene188564

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%

Source	Gene names
Sma3	POPTRDRAFT_1117110; POPTRDRAFT_262951; RCOM_0667040;

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G34940.2	AtGUS3, GUS3 glucuronidase 3 chr5:13235912-13238718 REVERSE LENGTH=536	2.0e-14	47%
RefSeq	Arabidopsis thaliana	NP_851092.1	Heparanase-like protein 3 [Arabidopsis thaliana]	2.0e-14	47%
RefSeq	Populus trichocarpa	XP_002331013.1	predicted protein [Populus trichocarpa]	8.0e-22	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: your sequence is shorter than subject: 88 - 381

Fln protein: HRYLCAGLYRFRNSTAGNSRLEYHLTAKNGDLHSQTVLLNGNILEITSDGKIPSLPAVTVPANGPVIVHPLSIAFVQLPYVRFTACS*

Protein Length: 89

Fln nts: ACACCGGTATCTCTGTGCAGGTCTCTACAGGTTCAGGAACTCCACAGCCGGAAATTCTAGACTGGAATATCACTTAACAGCAAAAAACGGTGATCTGCATAGCCAGACTGTGCTCCTGAATGGGAACATTTTGGAGATAACATCTGATGGTAAGATACCCTCTTTACCGGCGGTGACAGTTCCTGCTAATGGACCAGTAATAGTACACCCTCTCTCTATTGCATTCGTACAGCTTCCTTATGTTCGATTCACAGCGTGTAGTTGA___TAGGAATTGGCTGTAGATCAAAGCTACCATTTAATTGGTTATTTTAGCTGAAAATTGAGTTGACTGCTATTGTTCCAAAGAGATGTTTGATCGGCTCAATGGCCCATGAATATATTTTCAGCAAAT

Fln Alignment:

AllPine_b_c21520___STAGNSRLEYHLTAKNGDLHSQTVLLNGNILEITSDGKIPSLPAVTVPANGPVIVHPLSIAFVQLPYVRFTACS
B8LM26________________STDRNSRLEYHLTAKDGDLHSQTVLLNGNILNITPDGEIPSLSAVTVPANRPILVAPLSIAFVNLPYVQFPACS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain