SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188403

Length: 440 nt

UniGene Fasta

>sp_v3.0_unigene188403
TCTCGGTCCGGCTGGGATCGTACCGTCAAGGTCTGGAATTTGGCCAACTGCAAGCTCAAGGCCAACCACTACGGCCACAACGGCTACTTGAACACCGTGACCGTTTCACCAGACGGTTCTCTGTGCGCTTCGGGCGGCAAAGACGGCCAGGCCATGCTCTGGGACTTGAACGACAACAAGCACTTGTACACCTTGGACAGCGGTGATGTCATCAACGCTCTGTGCTTCTCGCCGAACCGCTACTGGCTCTGCGCTGCCACCGGCAACTCCATCAAGATTTGGGACTTGGAGCACAAAGTCATCGTCGACGAGCTCAAGGCCGAGCTTACCAAGAGCAAGGAGCATTTCGTGCCCCAGTGCGTGTCGCTCGCCTGGTCTGCCGATGGTCTTACCCTGTACGCCGGCTACACCGACAACCTTATCAGAGTCTGGCAAGTTAG

Ace file of the UniGene sp_v3.0_unigene188403

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: LOW QUALITY PROTEIN: guanine nucleotide-binding protein subunit beta-2-like 1-like n=5 Tax=Amniota RepID=UPI0001D62689	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Guanine nucleotide-binding protein subunit beta-like protein	-	-	2.648e-18	-

Source	Gene names
Sma3	ARCA; At1g18080; At1g48630; At3g18130; CBLP; CHLREDRAFT_105734; F11I4_18; F9P7.2; GB1; GBLP; GSVIVT00017791001; LOC_Os01g49290; LeArcA1; LeArcA2; MICPUCDRAFT_28307; MICPUN_94482; OSJNBa0079H23.13; OSTLU_19794; OSTLU_48240; Os01g0686800; Os05g0552300; OsI_

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G18130.1	RACK1C_AT receptor for activated C kinase 1C chr3:6211109-6212371 REVERSE LENGTH=326	59%
RefSeq	Arabidopsis thaliana	NP_188441.1	receptor for activated C kinase 1C [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002318528.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTF3

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 146 - 321

Fln protein: SRSGWDRTVKVWNLANCKLKANHYGHNGYLNTVTVSPDGSLCASGGKDGQAMLWDLNDNKHLYTLDSGDVINALCFSPNRYWLCAATGNSIKIWDLEHKVIVDELKAELTKSKEHFVPQCVSLAWSADGLTLYAGYTDNLIRVWQV

Protein Length: 147

Fln nts: TCTCGGTCCGGCTGGGATCGTACCGTCAAGGTCTGGAATTTGGCCAACTGCAAGCTCAAGGCCAACCACTACGGCCACAACGGCTACTTGAACACCGTGACCGTTTCACCAGACGGTTCTCTGTGCGCTTCGGGCGGCAAAGACGGCCAGGCCATGCTCTGGGACTTGAACGACAACAAGCACTTGTACACCTTGGACAGCGGTGATGTCATCAACGCTCTGTGCTTCTCGCCGAACCGCTACTGGCTCTGCGCTGCCACCGGCAACTCCATCAAGATTTGGGACTTGGAGCACAAAGTCATCGTCGACGAGCTCAAGGCCGAGCTTACCAAGAGCAAGGAGCATTTCGTGCCCCAGTGCGTGTCGCTCGCCTGGTCTGCCGATGGTCTTACCCTGTACGCCGGCTACACCGACAACCTTATCAGAGTCTGGCAAGTTAG

Fln Alignment:

AllPine_b_c21177___WDRTVKVWNLANCKLKANHYGHNGYLNTVTVSPDGSLCASGGKDGQAMLWDLNDNKHLYTLDSGDVINALCFSPNRYWLCAATGNSIKIWDLEHKVIVDELKAELTKSKEHFVPQCVSLAWSADGLTLYAGYTDNLIRVWQV
C0PTF3________________WDRTVKVWNLANCKLRTTLTGHSGYINTCTVSPDGSLCASGGKDGVAMLWDLAEGKRLYSLDSGDIINSLCFSPNRYWLCAATQQCVKIWDLESKSVVEELRPNFNPTKKGQVPFCTSLAWSADGSTLFSGYTDGVIRVWGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain