SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187751

Length: 151 nt

UniGene Fasta

>sp_v3.0_unigene187751
CTCGGCAACCTTCACACAAAGAGTGCTTCAACAGTACACTCTATGGGCTACGTGGATAACTCAGTGCCCTCTTCTTTTGTTGGACACACGCATGCCTTATGGTAGTCTATCACTTGGCTGCGAGGAACATTTGGATCCTGCAGGCACAGGC

Ace file of the UniGene sp_v3.0_unigene187751

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative DNA-binding protein [Arabidopsis thaliana] gb\|AED94034.1\| putative DNA-binding protein [Arabidopsis thaliana]	-	-	3.0e-12	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	DNA helicase-like	-	-	7.852e-10	-

Source	Gene names
Sma3	GSVIVT00013871001; Os02g0704300; Os09g0130800; OsI_08612; OsI_30457; OsJ_08074; OsJ_28445; P0433B06.14-1; P0448B11.50-1; P0724B10.31; POPTRDRAFT_1097031; RCOM_1516900;

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	0.0	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G35970.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:14119060-14123078 REVERSE LENGTH=961	8.0e-17	91%
RefSeq	Arabidopsis thaliana	NP_198446.3	putative DNA-binding protein [Arabidopsis thaliana]	1.0e-16	91%
RefSeq	Populus trichocarpa	XP_002319231.1	predicted protein [Populus trichocarpa]	1.0e-17	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLV2

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 50 - 691

Fln protein: SATFTQRVLQQYTLWATWITQCPLLLLDTRMPYGSLSLGCEEHLDPAGTG

Protein Length: 51

Fln nts: CTCGGCAACCTTCACACAAAGAGTGCTTCAACAGTACACTCTATGGGCTACGTGGATAACTCAGTGCCCTCTTCTTTTGTTGGACACACGCATGCCTTATGGTAGTCTATCACTTGGCTGCGAGGAACATTTGGATCCTGCAGGCACAGGC

Fln Alignment:

AllPine_b_c19450___ATWITQCPLLLLDTRMPYGSLSLGCEEHLDPAGTG
B8LLV2________________ATWITQCPLLLLDTRMPYGSLSLGCEEHLDLAGTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain