SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187070

Length: 333 nt

UniGene Fasta

>sp_v3.0_unigene187070
AGGAAGCTTCCTATGGAAGATGTATGCCACTGTGAATGGCCGCTTCGTGGGATTCCACAGTTTGGAGTATTTTGTATATTTGATGGACACGGTGGGGCTGCAGCAGCTGAGGCTGCAAGCAAGATCATGCCACAAAAGCTGGCTGATATTCTGTTGGTCCCAGAAAAAAGAGAGGAAGTGCTCTATAATTGTGATGCGGCAGATGTTTTGAGAAATGCATTTAGAGAGACTGAAGCAGCATTAGACTGTCAGTATGAGGGCTGCACGGCAACAGTTCTCCTGTTGTGGTCTGATTTTAAAGAGGTTTTCTTTGCACAATGTGCAAATGTTGGA

Ace file of the UniGene sp_v3.0_unigene187070

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinase-associated protein phosphatase 1 [Solanum peruvianum]	-	-	4.0e-31	60%
FL-Next	sp=Protein phosphatase 2C 70; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Sma3	Kinase-associated protein phosphatase	-	-	1.687e-08	-

Source	Gene names
Sma3	At5g19280; F7K24.30; GSVIVT00019935001; KAPP; KAPP1; LOC_Os03g59530; OSJNBa0008C11.46; OSJNBa0028F23.13; Os03g0809700; Os07g0211400; OsI_14010; OsI_25354; OsJ_13055; OsJ_23536; PHYPADRAFT_134209; PHYPADRAFT_139979; POPTRDRAFT_720715; POPTRDRAFT_805045; RC

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein kinase binding	GO:0019901	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Transposase, IS4-like	IPR002559	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Kinase associated protein phosphatase	IPR016660	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G19280.2	-	3.0e-37	61%
RefSeq	Arabidopsis thaliana	NP_197429.1	protein phosphatase 2C 70 [Arabidopsis thaliana]	3.0e-37	61%
RefSeq	Populus trichocarpa	XP_002311606.1	predicted protein [Populus trichocarpa]	8.0e-39	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P46014

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 111 - 581

Fln protein: RKLPMEDVCHCEWPLRGIPQFGVFCIFDGHGGAAAAEAASKIMPQKLADILLVPEKREEVLYNCDAADVLRNAFRETEAALDCQYEGCTATVLLLWSDFKEVFFAQCANVG

Protein Length: 112

Fln nts: AGGAAGCTTCCTATGGAAGATGTATGCCACTGTGAATGGCCGCTTCGTGGGATTCCACAGTTTGGAGTATTTTGTATATTTGATGGACACGGTGGGGCTGCAGCAGCTGAGGCTGCAAGCAAGATCATGCCACAAAAGCTGGCTGATATTCTGTTGGTCCCAGAAAAAAGAGAGGAAGTGCTCTATAATTGTGATGCGGCAGATGTTTTGAGAAATGCATTTAGAGAGACTGAAGCAGCATTAGACTGTCAGTATGAGGGCTGCACGGCAACAGTTCTCCTGTTGTGGTCTGATTTTAAAGAGGTTTTCTTTGCACAATGTGCAAATGTTGGA

Fln Alignment:

AllPine_b_c17978___RKLPMEDVCHCEWPLRGIPQFGVFCIFDGHGGXXXXXXXSKIMPQKLADILLVPEKREEVLYNCDAADVLRNAFRETEAAL-DCQYEGCTATVLLLWSDFKEVFFAQCANVG
P46014________________RKLPMEDVCHYKWPLPGANKFGLFCVCDGHGGSGAAQSAIKIIPEVLANILSDSLRKEKVLSKRDASDVLRDMFAKTEARLEEHQYEGCTATVLLVWKDNEENFFAQCANLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain