SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene186512

Length: 461 nt

UniGene Fasta

>sp_v3.0_unigene186512
AGAGATCAATCTTTCGTCATGACTGTCAACGGTAGCGCCGAGGCCGGTTCGGCCCAAGCTGCTGAATCCACAGGCGATGGGATCGACGCTGCTGAGCTGCGCCTTAACGAGCTCGGATACAAGCAGGAGCTCAGAAGAGAAATGACATTGTTCAAGACTCTGGCGATTTCGTTCTCGACGATGACGCTATTCACGGGAATAACGCCCCTGTATGGGTCGAGCCTTCAGTATGGTGGACCCGCGCCTCTGGTCTGGGGATGGGTTGTGGTCTCGTTTTTCACGGCCTTCGTTGCCATTGCCATGTCCGAGATCTGTTCTTCATTTCCTGTGAGTGTTAATTTCTTTTGAAAACATTCAATTCTCTCTCCCAATTGCGAGCCTGAGTTCAGTTCCCGCGGAGGCATATTATATGCTTTTGTAATTTGCCAATCAGTGGTCATGAGTTCAATTTCCAGTCATAT

Ace file of the UniGene sp_v3.0_unigene186512

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid permease n=1 Tax=Zea mays RepID=B6SYL4_MAIZE	-	-	3.0e-36	82%
FL-Next	sp=Amino-acid permease BAT1 homolog; Oryza sativa subsp. japonica (Rice).	-	-	0.0	50%
Sma3	GABA-specific permease, putative	-	-	1.777e-09	-

Source	Gene names
Sma3	GSVIVT00015444001; GSVIVT00019307001; OSIGBa0102D10.6; OSJNBb0086G13.12; Os04g0435100; OsI_15667; OsI_15971; OsJ_14882; PHYPADRAFT_140330; PHYPADRAFT_147161; POPTRDRAFT_562518; RCOM_0562380; RCOM_0577350; VITISV_000645;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease subfamily	IPR004756	-	-
Sma3	Amino acid permease, conserved site	IPR004840	-	-
Sma3	Amino acid permease domain	IPR004841	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01170.1	BAT1 bidirectional amino acid transporter 1 chr2:102364-104462 REVERSE LENGTH=516	6.0e-23	48%
RefSeq	Arabidopsis thaliana	NP_565254.1	bidirectional amino acid transporter 1 [Arabidopsis thaliana]	8.0e-23	48%
RefSeq	Populus trichocarpa	XP_002309938.1	amino acid transporter [Populus trichocarpa]	1.99993e-41	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: B9EXZ6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 377 aas, your sequence is shorter than subject: 110 - 520

Fln protein: MTVNGSAEAGSAQAAESTGDGIDAAELRLNELGYKQELRREMTLFKTLAISFSTMTLFTGITPLYGSSLQYGGPAPLVWGWVVVSFFTAFVAIAMSEICSSFPVSVNFF*

Protein Length: 111

Fln nts: AGAGATCAATCTTTCGTC_-_ATGACTGTCAACGGTAGCGCCGAGGCCGGTTCGGCCCAAGCTGCTGAATCCACAGGCGATGGGATCGACGCTGCTGAGCTGCGCCTTAACGAGCTCGGATACAAGCAGGAGCTCAGAAGAGAAATGACATTGTTCAAGACTCTGGCGATTTCGTTCTCGACGATGACGCTATTCACGGGAATAACGCCCCTGTATGGGTCGAGCCTTCAGTATGGTGGACCCGCGCCTCTGGTCTGGGGATGGGTTGTGGTCTCGTTTTTCACGGCCTTCGTTGCCATTGCCATGTCCGAGATCTGTTCTTCATTTCCTGTGAGTGTTAATTTCTTTTGAAAACATTCAATTCTCTCTCCCAATTGCGAGCCTGAGTTCAGTTCCCGCGGAGGCATATTATATGCTTTTGTAATTTGCCAATCAGTGGTCATGAGTTCAATTTCCAGTCATAT

Fln Alignment:

AllPine_b_c16499___GDGIDAAELRLNELGYKQELRREMTLFKTLAISFSTMTLFTGITPLYGSSLQYGGPAPLVWGWVVVSFFTAFVAIAMSEICSSFPVS
B9EXZ6________________GGGGDTGHARLRELGYKQELKRDLSVLSNFAFSFSIISVLTGITTLYNTGLSFGGPATMTFGWFVAGAFTMTVGLSMAEICSSFPTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain