SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene186010

Length: 889 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene186010 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar serine protease n=1 Tax=Trichoderma atroviride RepID=Q0Q2H0_TRIAT	-	-	0.0	81%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	64%

Source	Gene names
Sma3	PHATRDRAFT_38966; PHATRDRAFT_bd1558;

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	PT repeat	IPR006970	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
176	33		66		0.997452
188	66		33		0.997454
218			33	66	0.997453
253	66		33		0.997452
254			33	66	0.997452
259			33	66	0.997452
260		66		33	0.997452
293	66		33		0.997452
296		66	33		0.997452
531	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain