SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene184971

Length: 327 nt

UniGene Fasta

>sp_v3.0_unigene184971
AAAAGATTGAGAAAATAAACGATGGAGTGGCCATCTGCCACTTGGATACGATGGAGTGGAGTGCGGGGCATGCAGCATTTAGGGCATTGGGACATAAGCCAGGCCAGATCGAAGTCTGCCACTGGATTTTTGAAAACGATCTTATTTGGGTGCCTCTAAACTGATGGCATCTCCCAAAATCCTACATTTTGCCTAATTACATATTGATATCAAAGAAATCTTCATCTCTGCAGTTTACTTTGAACGATGTAATTGCTTTCAACCTGAACTCGAACCTTATCTTTTGAAGCGATAAATAAATGGAAAAGTTAAGAAGCAGACATTTTC

Ace file of the UniGene sp_v3.0_unigene184971

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polygalacturonase 1 [Arabidopsis thaliana] sp\|O80760.1\|Y639_ARATH RecName: Full=Probable polygalacturonase non-catalytic subunit At1g60390; AltName: Full=Aromatic-rich glycoprotein At1g60390; Flags: Precursor gb\|AAC24065.1\| Strong similarity to AR0GP2 gen	-	-	3.0e-15	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Polygalacturonase-1 non-catalytic subunit beta, putative	-	-	5.379e-09	-

Source	Gene names
Sma3	AROGP3; At1g23760; At1g60390; At1g70370; BURP12; BURP16; F17O7.9; F5O8.31; GP1; GP2; GP3; GSVIVT00002686001; GSVIVT00002688001; GSVIVT00016109001; JP630; JP650; LOC_Os08g29200; LOC_Os10g26940; Os08g0380100; Os10g0409400; OsI_15976; OsI_30914; OsJ_31485; P

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	BURP domain	IPR004873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G60390.1	PG1 polygalacturonase 1 chr1:22247611-22249556 REVERSE LENGTH=624	1.0e-19	72%
RefSeq	Arabidopsis thaliana	NP_176242.1	polygalacturonase 1 [Arabidopsis thaliana]	2.0e-19	72%
RefSeq	Populus trichocarpa	XP_002314620.1	predicted protein [Populus trichocarpa]	4.0e-18	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLB0

Fln msg: your sequence is shorter than subject: 54 - 666

Fln protein: KIEKINDGVAICHLDTMEWSAGHAAFRALGHKPGQIEVCHWIFENDLIWVPLN*

Protein Length: 55

Fln nts: AAAAGATTGAGAAAATAAACGATGGAGTGGCCATCTGCCACTTGGATACGATGGAGTGGAGTGCGGGGCATGCAGCATTTAGGGCATTGGGACATAAGCCAGGCCAGATCGAAGTCTGCCACTGGATTTTTGAAAACGATCTTATTTGGGTGCCTCTAAACTGA___TGGCATCTCCCAAAATCCTACATTTTGCCTAATTACATATTGATATCAAAGAAATCTTCATCTCTGCAGTTTACTTTGAACGATGTAATTGCTTTCAACCTGAACTCGAACCTTATCTTTTGAAGCGATAAATAAATGGAAAAGTTAAGAAGCAGACATTTTC

Fln Alignment:

AllPine_b_c11642___KIEKINDGVAICHLDTMEWSAGHAAFRALGHKPGQIEVCHWIFENDLIWVPLN
B8LLB0________________KIEKINDGVAICHLDTTQWSAGHAAFVALGHKPGQIEVCHWIFENDLIWVPVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain