SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183746

Length: 669 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene183746 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plastid 3-keto-acyl-ACP synthase I [Helianthus annuus]	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Beta-ketoacyl-ACP synthase I	-	-	1.158e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-ketoacyl-acyl-carrier-protein synthase I.	EC:2.3.1.41	-	1.814e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		1.814e-15	%
Sma3	Metabolic pathways	01100		1.814e-15	%

Source	Gene names
Sma3	At5g46290; B1056G08.109; CHLREDRAFT_139619; CHLREDRAFT_205887; GSVIVT00003432001; GSVIVT00006723001; KAS I; KAS1; KAS12; KAS2; KASI; Kas; MICPUCDRAFT_49639; MICPUN_107432; MPL12.7; OSIGBa0140O07.8; OSJNBa0027P08.14; OSTLU_35878; Os04g0445700; Os06g0196600

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase activity	GO:0004315	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta-ketoacyl synthase	IPR000794	-	-
Sma3	Beta-ketoacyl synthase, N-terminal	IPR014030	-	-
Sma3	Beta-ketoacyl synthase, C-terminal	IPR014031	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46290.3	KASI 3-ketoacyl-acyl carrier protein synthase I chr5:18774439-18776629 REVERSE LENGTH=489	64%
RefSeq	Arabidopsis thaliana	NP_199441.1	3-oxoacyl-[acyl-carrier-protein] synthase I [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002299456.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
207		25		75	0.996473
217	75		25		0.996474
219	75	25			0.996473
223	25		75		0.996473
238	75		25		0.996473
241		75		25	0.996473
253	25		75		0.996473
272		25		75	0.996473
300		75		25	0.996473
302	25		75		0.996473
303		25		75	0.996481
326			75	25	0.996473
355	25		75		0.996473
359		25		75	0.996473
390	66		33		0.997452
404		66		33	0.997476
440	33	66			0.997459
470	66		33		0.997453
476			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain