SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183588

Length: 318 nt

UniGene Fasta

>sp_v3.0_unigene183588
ATCACTACCCACTCGGTGAGAGGTCTATCAAGTCTCCAGTTATAGGGTTCGTCATGGCATTTCGATATGTTTCACTGAATGTTATATTCCTATTTGCATTTGCATTTGCATTCATTCAATGCACCACTGCTCAGCTCAGCCCTACCTTTTATCAGAATACATGTCCGAATGTCACCAATATAGTGGGGCAGGTCATCCAGCAAGCTCTGCAAAATGATTCAAGGATTGCGGCCTCTCTCCTTCGTATGCATTTTCACGATTGCTTCGTTAATGGCTGTGATGGATCCGTTCTGTTAGATGACACAGCAAATTTTACAG

Ace file of the UniGene sp_v3.0_unigene183588

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anionic peroxidase swpa5 n=1 Tax=Ipomoea batatas RepID=Q5JBR5_IPOBA	-	-	3.0e-20	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Peroxidase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT3G32980; At1g49570; At2g38380; At2g38390; At3g32980; At3g49110; At3g49120; At4g08770; At4g08780; At5g06720; At5g06730; At5g19880; CEVI-1; Ep; F14J22.19; F28I16.30; F2K15.3; F2K15.4; FBP1; FBP5; FLXPER1; GMIPER1; GSVIVT00018769001; GSVIVT00018771001; GSV

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49120.1	ATPERX34, PERX34, PRXCB, ATPCB, PRX34 peroxidase CB chr3:18207819-18210041 FORWARD LENGTH=353	5.0e-25	65%
RefSeq	Arabidopsis thaliana	NP_190481.1	peroxidase 34 [Arabidopsis thaliana]	7.0e-25	65%
RefSeq	Populus trichocarpa	XP_002322726.1	predicted protein [Populus trichocarpa]	2.0e-25	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN21

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 88 - 324

Fln protein: MAFRYVSLNVIFLFAFAFAFIQCTTAQLSPTFYQNTCPNVTNIVGQVIQQALQNDSRIAASLLRMHFHDCFVNGCDGSVLLDDTANFT

Protein Length: 89

Fln nts: ATCACTACCCACTCGGTGAGAGGTCTATCAAGTCTCCAGTTATAGGGTTCGTC_-_ATGGCATTTCGATATGTTTCACTGAATGTTATATTCCTATTTGCATTTGCATTTGCATTCATTCAATGCACCACTGCTCAGCTCAGCCCTACCTTTTATCAGAATACATGTCCGAATGTCACCAATATAGTGGGGCAGGTCATCCAGCAAGCTCTGCAAAATGATTCAAGGATTGCGGCCTCTCTCCTTCGTATGCATTTTCACGATTGCTTCGTTAATGGCTGTGATGGATCCGTTCTGTTAGATGACACAGCAAATTTTACAG

Fln Alignment:

AllPine_b_c6194___MAFRYVSLNVIXXXXXXXXXIQCTTAQLSPTFYQNTCPNVTNIVGQVIQQALQNDSRIAASLLRMHFHDCFVNGCDGSVLLDDTANFT
A9NN21________________MAFAFFSLNV---ELCILAFVVCSSAQLSPTFYQNTCPNVSSIVGQVLQQALQKDSRMAASLIHLFFHDCFVNGCDGSVLLSNSANFT

SSRs (tot: 1)

Start position	End position	Sequence	Length
92	112	ATTTGC ATTTGC ATTTGC ATT	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain