SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183144

Length: 451 nt

UniGene Fasta

>sp_v3.0_unigene183144
TTGTTGACCACGACGGAGGGAAGGGTAGAGGACTAATGTGGAGATGAAGAAGCCACTCGAGGGTCGAGTGGCGGTCGTGACCGGCGCCTCTCGCGGTCTGGGTGCCGAGATTGCCCTTCACCTGGCTGCCGACGGCGCCAATGTTGTGGTCAACTACCTGAACAACGCAGACAAAGCGGAACAGATCGCCTCTGCTATCAATTCATCCCGTGGTCACATGGCGGCCATTGCCGTGAGAGCCGATGTTTCAAGCTCTGGGCATGTGGCCCGGCTATTCGACAAGGCGGAGGAAATTTTCGGAGTAGTTCACATAGTAGTCAATAATGCAGGGATCATTGACTCCACCTGCGCAACGATAGCGGAGACCAGCCCGGAGGCGTGGGACGCCACTTTCAGCGCCAATTGCAGAGCCCCTTTTCTCACCTGCAAAGAGGCCGCCAGGAGGCTCCTC

Ace file of the UniGene sp_v3.0_unigene183144

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Short-chain type dehydrogenase/reductase n=1 Tax=Picea abies RepID=SDR1_PICAB	-	-	3.0e-32	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Short-chain type dehydrogenase, putative	-	-	1.702e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	4.203e-08	-

Source	Gene names
Sma3	AT4g13180; At3g03980; At3g04000; At4g13180; F17N18.70; GSVIVT00025486001; GSVIVT00025488001; LOC_Os10g31780; OSJNBa0050F10.22; Os06g0185100; Os07g0170000; Os07g0561500; Os10g0456100; OsI_21942; OsI_26479; OsI_33875; OsJ_24737; OsJ_31766; P0406F06.12; P055

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to arsenic-containing substance	GO:0046685	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13180.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:7657373-7658164 REVERSE LENGTH=263	7.0e-38	50%
RefSeq	Arabidopsis thaliana	NP_193054.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	8.0e-38	50%
RefSeq	Populus trichocarpa	XP_002325412.1	predicted protein [Populus trichocarpa]	2.0e-36	51%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQN3

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 136 - 252

Fln protein: MKKPLEGRVAVVTGASRGLGAEIALHLAADGANVVVNYLNNADKAEQIASAINSSRGHMAAIAVRADVSSSGHVARLFDKAEEIFGVVHIVVNNAGIIDSTCATIAETSPEAWDATFSANCRAPFLTCKEAARRLL

Protein Length: 137

Fln nts: TTGTTGACCACGACGGAGGGAAGGGTAGAGGACTAATGTGGAG_-_ATGAAGAAGCCACTCGAGGGTCGAGTGGCGGTCGTGACCGGCGCCTCTCGCGGTCTGGGTGCCGAGATTGCCCTTCACCTGGCTGCCGACGGCGCCAATGTTGTGGTCAACTACCTGAACAACGCAGACAAAGCGGAACAGATCGCCTCTGCTATCAATTCATCCCGTGGTCACATGGCGGCCATTGCCGTGAGAGCCGATGTTTCAAGCTCTGGGCATGTGGCCCGGCTATTCGACAAGGCGGAGGAAATTTTCGGAGTAGTTCACATAGTAGTCAATAATGCAGGGATCATTGACTCCACCTGCGCAACGATAGCGGAGACCAGCCCGGAGGCGTGGGACGCCACTTTCAGCGCCAATTGCAGAGCCCCTTTTCTCACCTGCAAAGAGGCCGCCAGGAGGCTCCTC

Fln Alignment:

AllPine_b_c3529___MKKPLEGRVAVVTGASRGLGAEIALHLAADGANVVVNYLNNADKAEQIASAIN---SSRGHMAAIAVRADVSSSGHVARLFDKAEEIFGVVHIVVNNAGIIDSTCATIAETSPEAWDATFSANCRAPFLTCKEAARRLL
A9NQN3________________MTMPLEGRVAIVTGASRGIGREIALHLAEKGAKVVVNYSSNQGTAEKVASTINNLASSGDGVRAIVCKADVAEPSQVAQLFDMAEHTFGPLHIVVNNAGILDSKNPTIAQTSDEDWDRTFQVNCKGVFLCSREAAKRIV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
178	40		60		1.0
261		66	33		0.997452
301		66		33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain