SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183131

Length: 800 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene183131 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative aldo/keto reductase 2 [Salvia miltiorrhiza]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Aldo/keto reductase, putative	-	-	1.518e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pyridoxine 4-dehydrogenase.	EC:1.1.1.65	-	3.371e-32	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Vitamin B6 metabolism	00750		3.371e-32	%
Sma3	Metabolic pathways	01100		3.371e-32	%

Source	Gene names
Sma3	ATB2; At1g10810; At1g60680; At1g60690; At1g60710; At1g60730; B1040D09.1; CHLREDRAFT_120977; F8A5.20; F8A5.21; F8A5.24; F8A5.26; GSVIVT00020060001; GSVIVT00031154001; GSVIVT00031156001; GSVIVT00031157001; GSVIVT00031159001; GSVIVT00031162001; GSVIVT0003116

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	-
Sma3	RNA methyltransferase TrmH family	IPR004441	-	-
Sma3	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	IPR006913	-	-
Sma3	RNA 2-O ribose methyltransferase, substrate binding	IPR013123	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60690.1	NAD(P)-linked oxidoreductase superfamily protein chr1:22349892-22351668 REVERSE LENGTH=345	61%
RefSeq	Arabidopsis thaliana	NP_176268.1	NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002302899.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
619		87		12	0.992556

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain