SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168356

Length: 106 nt

UniGene Fasta

>sp_v3.0_unigene168356
CATTGACCACTGTCCTAATGGTGGGTGTTGTAGGACAAGCTCGGTACCTGACCCACATTGCAAGGACACATATGGTCCCACCATGGTTTGCAATGGTGCATGAAAA

Ace file of the UniGene sp_v3.0_unigene168356

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	amino acid permease domain containing protein [Oryza sativa Japonica Group] gb\|ABF97833.1\| Amino acid permease family protein, expressed [Oryza sativa Japonica Group]	-	-	2.0e-08	78%
FL-Next	sp=Cationic amino acid transporter 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	Cationic amino acid transporter	-	-	2.801e-10	-

Source	Gene names
Sma3	At2g34960; B1394A07.6; GSVIVT00028403001; GSVIVT00030103001; LOC_Os03g43970; Os03g0641200; OsI_12773; OsJ_11862; PHYPADRAFT_162933; POPTRDRAFT_800060; POPTRDRAFT_806659; POPTRDRAFT_808200; PtrCAT11; PtrCAT12; PtrCAT5; RCOM_1092970; RCOM_1093080;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	L-glutamate transmembrane transporter activity	GO:0005313	Molecular Function	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	arginine transmembrane transporter activity	GO:0015181	Molecular Function	-
Sma3	L-lysine transmembrane transporter activity	GO:0015189	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	L-arginine import	GO:0043091	Biological Process	-
Sma3	L-glutamate import	GO:0051938	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Cationic amino acid transport permease	IPR004755	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G34960.1	CAT5 cationic amino acid transporter 5 chr2:14744175-14745884 REVERSE LENGTH=569	3.0e-12	75%
RefSeq	Arabidopsis thaliana	NP_181041.1	cationic amino acid transporter 5 [Arabidopsis thaliana]	4.0e-12	75%
RefSeq	Populus trichocarpa	XP_002303714.1	cationic amino acid transporter [Populus trichocarpa]	4.0e-13	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O64759

Fln msg: Distance to subject end: 183 aas, your sequence is shorter than subject: 34 - 569

Fln protein: LTTVLMVGVVGQARYLTHIARTHMVPPWFAMVHE

Protein Length: 35

Fln nts: CATTGACCACTGTCCTAATGGTGGGTGTTGTAGGACAAGCTCGGTACCTGACCCACATTGCAAGGACACATATGGTCCCACCATGGTTTGCAATGGTGCATGAAAA

Fln Alignment:

HIF1XHV03G3WDE___LTTVLMVGVVGQARYLTHIARTHMVPPWFAMVH
O64759________________MTTVLLVGALGQARYVTHIARTHMIPPIFALVH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain