SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168350

Length: 110 nt

UniGene Fasta

>sp_v3.0_unigene168350
CACATCCTTCTTGAGAAGCCCCCTGCCTTGTCTGTACAAGACCTTGACATCATCATTGAGGTCTGCAACACAAATGGTGTTCAACTTATGGATGGCACCATGTGGATGCA

Ace file of the UniGene sp_v3.0_unigene168350

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann fold	-	-	3.0e-05	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, N-terminal	IPR000683	-	-
Sma3	Oxidoreductase, C-terminal	IPR004104	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002306732.1	predicted protein [Populus trichocarpa]	3.0e-11	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZF1

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 36 - 369

Fln protein: HILLEKPPALSVQDLDIIIEVCNTNGVQLMDGTMWM

Protein Length: 37

Fln nts: CACATCCTTCTTGAGAAGCCCCCTGCCTTGTCTGTACAAGACCTTGACATCATCATTGAGGTCTGCAACACAAATGGTGTTCAACTTATGGATGGCACCATGTGGATGCA

Fln Alignment:

HIF1XHV03FPJEH___HILLEKPPALSVQDLDIIIEVCNTNGVQLMDGTMWM
A9NZF1________________HILLEKPPALSVEELDKIIEACNANGLQLMDCTMWM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain