SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168220

Length: 82 nt

UniGene Fasta

>sp_v3.0_unigene168220
ATTTTCTATTGATAAACCAAAATATACTGATCCCCATGTAAAGGCAAATGCATTGTTGCAAGCGTACTTCTCAAGGCATGTT

Ace file of the UniGene sp_v3.0_unigene168220

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sec63 domain containing protein	-	-	7.0e-07	48%
FL-Next	tr=Putative uncharacterized protein Sb04g000670; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	92%

Source	Gene names
Sma3	PHYPADRAFT_205535;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018127	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XRK9

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 27 - 2173

Fln protein: FSIDKPKYTDPHVKANALLQAYFSRHV

Protein Length: 28

Fln nts: ATTTTCTATTGATAAACCAAAATATACTGATCCCCATGTAAAGGCAAATGCATTGTTGCAAGCGTACTTCTCAAGGCATGTT

Fln Alignment:

HIF1XHV03G7SX4___FSIDKPKYTDPHVKANALLQAYFSRH
C5XRK9________________FSIDKPKYGDPHVKANALLQAHFSRH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain